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The complete mitochondrial genome of Talpa aquitania (Talpidae; Insectivora), a mole species endemic to northern Spain and southern France
- Source :
- Molecular Biology Reports. 47:2397-2403
- Publication Year :
- 2020
- Publisher :
- Springer Science and Business Media LLC, 2020.
-
Abstract
- The complete mitogenome sequence of Talpa aquitania, a recently described Talpa species, was assembled using whole-genome sequencing data. It varies in length from 16,776 to 16,846 bp, contains 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes, one origin of L-strand replication, and a control region. In the control region, which varied from 1320 to 1390 bp, we identified the extended termination-associated sequence (ETAS-1 and ETAS-2) and the conserved sequence blocks (CSB-1, 2, 3, B, C, D, E, F). In addition, this region includes a 10 bp tandem repeat DNA sequence, with a variable number of repeats that suggest the existence of heteroplasmy. Phylogeny reconstructions based on Maximum Likelihood, Neighbor-joining and Bayesian inference analyses yielded phylogenies with similar topologies demonstrating that T. aquitania and T. occidentalis are sister species.
- Subjects :
- 0301 basic medicine
Mitochondrial DNA
Biology
DNA sequencing
Conserved sequence
Open Reading Frames
03 medical and health sciences
0302 clinical medicine
Tandem repeat
Phylogenetics
Genetics
Animals
Molecular Biology
Gene
Phylogeny
Base Sequence
Whole Genome Sequencing
Phylogenetic tree
Computational Biology
Eulipotyphla
Genomics
Sequence Analysis, DNA
General Medicine
biology.organism_classification
Genes, Mitochondrial
030104 developmental biology
Spain
Evolutionary biology
030220 oncology & carcinogenesis
Genome, Mitochondrial
Talpa
France
Subjects
Details
- ISSN :
- 15734978 and 03014851
- Volume :
- 47
- Database :
- OpenAIRE
- Journal :
- Molecular Biology Reports
- Accession number :
- edsair.doi.dedup.....bfc800a14e0b37c8f387461f1d6642bf