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Accurate analytic solution of chemical master equations for gene regulation networks in a single cell
- Source :
- Physical Review E. 97
- Publication Year :
- 2018
- Publisher :
- American Physical Society (APS), 2018.
-
Abstract
- Studying gene regulation networks in a single cell is an important, interesting, and hot research topic of molecular biology. Such process can be described by chemical master equations (CMEs). We propose a Hamilton-Jacobi equation method with finite-size corrections to solve such CMEs accurately at the intermediate region of switching, where switching rate is comparable to fast protein production rate. We applied this approach to a model of self-regulating proteins [H. Ge et al., Phys. Rev. Lett. 114, 078101 (2015)PRLTAO0031-900710.1103/PhysRevLett.114.078101] and found that as a parameter related to inducer concentration increases the probability of protein production changes from unimodal to bimodal, then to unimodal, consistent with phenotype switching observed in a single cell.
- Subjects :
- Regulation of gene expression
Physics
Cell
Proteins
Intermediate region
Models, Biological
01 natural sciences
Cell Physiological Phenomena
010305 fluids & plasmas
medicine.anatomical_structure
Models, Chemical
Scientific method
0103 physical sciences
Master equation
medicine
Gene Regulatory Networks
Inducer
010306 general physics
Biological system
Analytic solution
Subjects
Details
- ISSN :
- 24700053, 24700045, and 00319007
- Volume :
- 97
- Database :
- OpenAIRE
- Journal :
- Physical Review E
- Accession number :
- edsair.doi.dedup.....c0a8d2087c6c120e5542af77e7139d5f
- Full Text :
- https://doi.org/10.1103/physreve.97.012412