Back to Search Start Over

Accurate analytic solution of chemical master equations for gene regulation networks in a single cell

Authors :
David B. Saakian
Guan-Rong Huang
Chin-Kun Hu
Source :
Physical Review E. 97
Publication Year :
2018
Publisher :
American Physical Society (APS), 2018.

Abstract

Studying gene regulation networks in a single cell is an important, interesting, and hot research topic of molecular biology. Such process can be described by chemical master equations (CMEs). We propose a Hamilton-Jacobi equation method with finite-size corrections to solve such CMEs accurately at the intermediate region of switching, where switching rate is comparable to fast protein production rate. We applied this approach to a model of self-regulating proteins [H. Ge et al., Phys. Rev. Lett. 114, 078101 (2015)PRLTAO0031-900710.1103/PhysRevLett.114.078101] and found that as a parameter related to inducer concentration increases the probability of protein production changes from unimodal to bimodal, then to unimodal, consistent with phenotype switching observed in a single cell.

Details

ISSN :
24700053, 24700045, and 00319007
Volume :
97
Database :
OpenAIRE
Journal :
Physical Review E
Accession number :
edsair.doi.dedup.....c0a8d2087c6c120e5542af77e7139d5f
Full Text :
https://doi.org/10.1103/physreve.97.012412