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New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk

Authors :
Kenneth Rice
Amy J. Swift
Veronique Vitart
Lu Qi
Kaisa Silander
Olivier Le Bacquer
Laura Crisponi
David S. Siscovick
Bo Isomaa
Anne U. Jackson
Anke Tönjes
Richard N. Bergman
Rosa Maria Roccasecca
Luigi Ferrucci
Narisu Narisu
Kari Stefansson
Holly E. Syddall
Giuseppe Paolisso
Kim L. Ward
Paul Elliott
Scott M. Grundy
Paul Johnson
Jerome I. Rotter
Philippe Froguel
James B. Meigs
George Davey Smith
Andrew T. Hattersley
Leena Peltonen
Eric J.G. Sijbrands
Serena Sanna
María TeresaMartínez-Larrad
David Altshuler
Harald Grallert
Caroline S. Fox
Nita G. Forouhi
Dorret I. Boomsma
Harry Campbell
Jean Tichet
Angelo Scuteri
Aroon D. Hingorani
Daniel S. Pearson
Meena Kumari
Silvia Naitza
Shah Ebrahim
Manjinder S. Sandhu
Jose C. Florez
Cyrus Cooper
David M. Nathan
Joseph Hung
Fredrik Karpe
Ozren Polasek
Philip J. Barter
Ruth McPherson
Benjamin F. Voight
Wolfgang Rathmann
Abbas Dehghan
Udo Seedorf
Beverley M. Shields
Antti Jula
Pau Navarro
Josephine M. Egan
Rune R. Frants
Leif Groop
Gunnar Sigursson
Seppo Koskinen
Vincent Mooser
François Pattou
Jing Hua Zhao
Irene Pichler
John F. Peden
Göran Hallmans
Toshiko Tanaka
Ruth J. F. Loos
Peter Kovacs
Andrew D. Morris
Cécile Lecoeur
Jeffrey R. O'Connell
Massimo Mangino
Nicole Vogelzangs
Rhian Gwilliam
Gordon H. Williams
Carina Zabena
Naomi Hammond
Amélie Bonnefond
Björn Zethelius
Joachim Spranger
Nancy L. Pedersen
Christopher J. Groves
Nicholas J. Timpson
George Dedoussis
Veikko Salomaa
Peter Henneman
Andrew Walley
Serge Hercberg
Ian N. M. Day
Simon Heath
Matt Neville
Alex S. F. Doney
Robert Clarke
Olov Rolandsson
Panos Deloukas
Eric Boerwinkle
Y. AnteroKesaniemi
Mike Sampson
Gerard Waeber
Sven Bergmann
Ben A. Oostra
Manuel Serrano-Ríos
Mandy van Hoek
Christine Cavalcanti-Proença
Anna L. Gloyn
Ulla Sovio
Andrew P. Morris
Anneli Pouta
Amanda J. Bennett
Paul Scheet
Peter Schwarz
Jaakko Tuomilehto
Hugh Watkins
Johanna Kuusisto
Denis Rybin
Anna LiisaHartikainen
Maria GraziaFranzosi
Unnur Thorsteinsdottir
Rafn Benediktsson
Alan F. Wright
Colin N. Apalmer
Anuj Goel
Yavuz Ariyurek
Lars Lind
Robert Sladek
Stefan R. Bornstein
Reedik Mägi
Laila Simpson
Tim D. Spector
Paul W. Franks
Nicholas L. Smith
John R. B. Perry
Peter Vollenweider
Suzannah Bumpstead
Ruth E. Pakyz
Christa Meisinger
Alan R. Shuldiner
Josée Dupuis
Man Li
Eric J. Brunner
Francis S. Collins
Torben Hansen
James F. Wilson
Guangju Zhai
Igor Rudan
Nicole L. Glazer
Marco Orrù
Pierre Meneton
Knut Borch-Johnsen
Eleanor Wheeler
Gonçalo R. Abecasis
Mark I. McCarthy
Jouke JanHottenga
Inga Prokopenko
Ping An
Jérôme Delplanque
Albert Hofman
Andrew B. Singleton
Gabe Crawford
Thomas A. Buchanan
Avan Aihie Sayer
Richard M. Watanabe
David Schlessinger
A C Fedson
André G. Uitterlinden
Frank B. Hu
Jaqueline C. MWitteman
Dhiraj Varma
Ingrid B. Borecki
Sutapa Mukherjee
Murielle Bochud
Barbara Thorand
Christian Gieger
Lori L. Bonnycastle
Stephen J. Sharp
Markus Perola
Caroline Hayward
Kristin Ardlie
J. Graessler
Robert W. Mahley
Toby Johnson
Jian'an Luan
Joshua C. Randall
Cornelia M. van Duijn
Samuli Ripatti
Ko Willems van Dijk
Valgerdur Steinthorsdottir
Yurii S. Aulchenko
G. Mark Lathrop
Christian Dina
Eleftheria Zeggini
Cecilia M. Lindgren
Stavroula Kanoni
Timothy M. Frayling
Dawn M. Waterworth
Marika Kaakinen
Timo T. Valle
Diana Zelenika
Yii Der IdaChen
Angela Silveira
Nigel W. Rayner
Aimo Ruokonen
Yun Li
Cristian Pattaro
Annelli Sandbæk
Richa Saxena
Danielle Posthuma
Steven A. McCarroll
Niels Grarup
Samy Hadjadj
Pilar Galan
Xijing Han
Lyle J. Palmer
Ulf Gyllensten
Peter P. Pramstaller
Manuela Uda
Jarred B. McAteer
Brenda W.J.H. Penninx
Debbie A Lawlor
Torben Jørgensen
Beatrice Knight
Yvonne Böttcher
Claudia Langenberg
Nicole Soranzo
Ghislain Rocheleau
Erik Ingelsson
Mario A. Morken
Michael Roden
Felicity Payne
David R. Hillman
Michael Marmot
Karen L. Mohlke
Heather M. Stringham
Bruce M. Psaty
Gudmar Thorleifsson
Yoav Ben-Shlomo
Inês Barroso
W. H. Linda Kao
James S. Pankow
Valeriya Lyssenko
Nicholas J. Wareham
Tiinamaija Tuomi
Ann ChristineSyvänen
Braxton D. Mitchell
Alisa K. Manning
Mika Kivimäki
Peter Wagner
Praveen Sethupathy
G. BragiWalters
Jaakko Kaprio
Kijoung Song
Marjo Riitta-Järvelin
Michael A. Province
Andrew A. Hicks
Marilyn C. Cornelis
Sarah H. Wild
David Meyre
Guillaume Charpentier
Patrik K. E. Magnusson
David Melzer
Jennie Hui
Peter Shrader
Michael Stumvoll
Mark O. Goodarzi
Michael R. Erdos
Oluf Pedersen
Andreas Pfeiffer
Augustine Kong
Christian Herder
Laura J. Scott
John W. GYarnell
Kirsten Ohm Kyvik
Beverley Balkau
Antje Fischer-Rosinsky
Gonneke Willemsen
Thomas Illig
Neelam Hassanali
Markku Laakso
Michael Boehnke
John Beilby
Christopher S. Franklin
Fernando Rivadeneira
M. Carola Zillikens
Michael N. Weedon
Antonio Cao
Mark E. Cooper
Simon C. Potter
Eco J. C. de Geus
H.-Erich Wichmann
Amanda F. Elliott
Lachlan J. McOin
Sophie Visvikis-Siest
Thomas Sparsø
Laura J. McCulloch
Taina K. Lajunen
Peter S. Chines
Nabila Bouatia-Naji
Medical Research Council (MRC)
Biological Psychology
Functional Genomics
Neuroscience Campus Amsterdam - Anxiety & Depression
Neuroscience Campus Amsterdam - Attention & Cognition
EMGO+ - Mental Health
Ophthalmology
Epidemiology
Clinical Genetics
Dermatology
Internal Medicine
DIAGRAM Consortium
GIANT Consortium
Global BPgen Consortium
Anders Hamsten on behalf of Procardis Consortium
MAGIC investigators
Human genetics
Psychiatry
EMGO - Mental health
NCA - Attention & Cognition
NCA - Anxiety & Depression
Source :
Nature Genetics, Dupuis, J, Langenberg, C, Prokopenko, I, Saxena, R, Soranzo, N, Jackson, A U, Wheeler, E, Glazer, N L, Bouatia-Naji, N, Gloyn, A L, Lindgren, C M, Mägi, R, Morris, A P, Randall, J, Johnson, T, Hottenga, J J, de Geus, E J C, Kaprio, J, Kyvik, K O, Pedersen, N L, Perola, M, Posthuma, D, Rivadeneira, F, Uitterlinden, A G, Willems van Dijk, K, van Hoek, M, Vogelzangs, N, Willemsen, G, Witteman, J C M, Zillikens, M C, Penninx, B W J H, Boomsma, D I, van Duijn, C M, Aulchenko, Y S, Waterworth, D, Vollenweider, P, Peltonen, L, Mooser, V, Abecasis, G R, Wareham, N J, Sladek, R, Froguel, P, Watanabe, R M, Meigs, J B, Groop, L C, Boehnke, M, McCarthy, M I, Florez, J C & Barroso, I 2010, ' New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk ', Nature Genetics, vol. 42, no. 2, pp. 105-116 . https://doi.org/10.1038/ng.520, Nature genetics, U32, Dupuis, J, Langenberg, C, Prokopenko, I, Saxena, R, Soranzo, N, Jackson, A U, Wheeler, E, Glazer, N L, Bouatia-Naji, N, Gloyn, A L, Lindgren, C M, Mägi, R, Morris, A P, Randall, J, Johnson, T, Elliott, P, Rybin, D, Thorleifsson, G, Steinthorsdottir, V, Henneman, P, Grallert, H, Dehghan, A, Hottenga, J J, Franklin, C S, Navarro, P, Song, K, Goel, A, Perry, J R B, Egan, J M, Lajunen, T, Grarup, N, Sparsø, T, Doney, A, Voight, B F, Stringham, H M, Li, M, Kanoni, S, Shrader, P, Cavalcanti-Proença, C, Kumari, M, Qi, L, Timpson, N J, Hayward, C, Vitart, V, Wild, S H, Morris, A, Rudan, I, Wright, A F & Campbell, H & Wilson, J F 2010, ' New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk ', Nature Genetics, vol. 42, no. 2, pp. 105-116 . https://doi.org/10.1038/ng.520, Nature Genetics, 42(2), 105-116. Nature Publishing Group, Yarnell, J 2010, ' New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk ' Nature Genetics, vol. 42, no. 2, pp. 105-119 . DOI: 10.1038/ng.520, Nature Genetics; Vol 42, Nature Genetics, 42(2), 105-U32. Nature Publishing Group, Nature genetics, vol. 42, no. 2, pp. 105-116, Nature Genetics, 42(5), 464-464, Nature Genetics, 42(2), 105, Dupuis, J, Langenberg, C, Prokopenko, I, Saxena, R, Soranzo, N, Jackson, A U, Wheeler, E, Glazer, N L, Bouatia-Naji, N, Gloyn, A L, Lindgren, C M, Mägi, R, Morris, A P, Randall, J, Johnson, T, Elliott, P, Rybin, D, Thorleifsson, G, Steinthorsdottir, V, Henneman, P, Grallert, H, Dehghan, A, Hottenga, J J, Franklin, C S, Navarro, P, Song, K, Goel, A, Perry, J R B, Egan, J M, Lajunen, T, Grarup, N, Sparsø, T H, Doney, A, Voight, B F, Stringham, H M, Li, M, Kanoni, S, Shrader, P, Cavalcanti-Proença, C, Kumari, M, Lu, Q, Timpson, N J, Gieger, C, Zabena, C, Rocheleau, G, Ingelsson, E, An, P, O'Connell, J, Borch-Johnsen, K, Kyvik, K O & DIAGRAM Consortium 2010, ' New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk ', Nature Genetics, vol. 42, no. 2, pp. 105-16 . https://doi.org/10.1038/ng.520
Publication Year :
2010

Abstract

Levels of circulating glucose are tightly regulated. To identify new loci influencing glycemic traits, we performed meta-analyses of 21 genome-wide association studies informative for fasting glucose, fasting insulin and indices of beta-cell function (HOMA-B) and insulin resistance (HOMA-IR) in up to 46, 186 nondiabetic participants. Follow-up of 25 loci in up to 76, 558 additional subjects identified 16 loci associated with fasting glucose and HOMA-B and two loci associated with fasting insulin and HOMA-IR. These include nine loci newly associated with fasting glucose (in or near ADCY5, MADD, ADRA2A, CRY2, FADS1, GLIS3, SLC2A2, PROX1 and C2CD4B) and one influencing fasting insulin and HOMA-IR (near IGF1). We also demonstrated association of ADCY5, PROX1, GCK, GCKR and DGKB-TMEM195 with type 2 diabetes. Within these loci, likely biological candidate genes influence signal transduction, cell proliferation, development, glucose-sensing and circadian regulation. Our results demonstrate that genetic studies of glycemic traits can identify type 2 diabetes risk loci, as well as loci containing gene variants that are associated with a modest elevation in glucose levels but are not associated with overt diabetes.

Subjects

Subjects :
Blood Glucose
Netherlands Twin Register (NTR)
Candidate gene
Genome-wide association study
Type 2 diabetes
CIRCADIAN CLOCK
TRIGLYCERIDE LEVELS
0302 clinical medicine
Delta-5 Fatty Acid Desaturase
Databases, Genetic
Homeostasis
GENETICS & HEREDITY
Anders Hamsten on behalf of Procardis Consortium
Child
Genetics
PLASMA-GLUCOSE
0303 health sciences
Glucokinase regulatory protein
COMMON VARIANTS
11 Medical And Health Sciences
Fasting
MAGIC investigators
3. Good health
MODEL ASSESSMENT
Life Sciences & Biomedicine
Adult
medicine.medical_specialty
ESSENTIAL COMPONENTS
Adolescent
DNA Copy Number Variations
Alleles
Blood Glucose/genetics
Blood Glucose/metabolism
DNA Copy Number Variations/genetics
Diabetes Mellitus, Type 2/genetics
Fasting/blood
Gene Expression Regulation
Genetic Loci/genetics
Genetic Predisposition to Disease
Genome-Wide Association Study
Homeostasis/genetics
Humans
Meta-Analysis as Topic
Polymorphism, Single Nucleotide/genetics
Quantitative Trait Loci/genetics
Quantitative Trait, Heritable
Reproducibility of Results
Quantitative Trait Loci
030209 endocrinology & metabolism
Biology
DIAGRAM Consortium
INSULIN-SECRETION
Polymorphism, Single Nucleotide
Article
Fasting glucose
03 medical and health sciences
Insulin resistance
SDG 3 - Good Health and Well-being
Diabetes mellitus
Internal medicine
genome wide association study
glucose
diabetes type 2
medicine
GIANT Consortium
Allele
GENOME-WIDE ASSOCIATION
Global BPgen Consortium
030304 developmental biology
Glycemic
Science & Technology
genome-wide association beta-cell dysfunction plasma-glucose insulin-secretion triglyceride levels essential components model assessment common variants circadian clock disease risk
DISEASE RISK
06 Biological Sciences
medicine.disease
Endocrinology
Diabetes Mellitus, Type 2
Genetic Loci
biology.protein
BETA-CELL DYSFUNCTION
Developmental Biology

Details

Language :
English
ISSN :
15461718 and 10614036
Volume :
42
Issue :
2
Database :
OpenAIRE
Journal :
Nature Genetics
Accession number :
edsair.doi.dedup.....c31914cd113c85ee43e2a501595f313a
Full Text :
https://doi.org/10.1038/ng.520