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Loss of introns along the evolutionary diversification pathway of snake venom disintegrins evidenced by sequence analysis of genomic DNA from Macrovipera lebetina transmediterranea and Echis ocellatus
- Source :
- Journal of Molecular Evolution, Journal of Molecular Evolution, Springer Verlag, 2007, 64 (2), pp.261-271. ⟨10.1007/s00239-006-0161-4⟩
- Publication Year :
- 2007
- Publisher :
- HAL CCSD, 2007.
-
Abstract
- International audience; Analysis of cDNAs from Macrovipera lebetina transmediterranea (Mlt) and Echis ocellatus (Eo) venom gland libraries encoding disintegrins argued strongly for a common ancestry of the messengers of short disintegrins and those for precursors of dimeric disintegrin chains. We now report the sequence analysis of disintegrin-coding genes from these two vipers. Genomic DNAs for dimeric disintegrin subunits Ml_G1 and Ml_G2 (Mlt) and Eo_D3 ( Eo) contain single 1-kb introns exhibiting the 5'-GTAAG (donor)/3'-AG ( acceptor) consensus intron splicing signature. On the other hand, the short RTS-disintegrins M1_G3 ( Mlt) and Eo_RTS ( Eo) and the short RGD-disintegrin ocellatusin (Eo) are transcribed from intronless genomic DNA sequences, indicating that the evolutionary pathway leading to the emergence of short disintegrins involved the removal of all intronic sequences. The insertion position of the intron within Ml_G1, Ml_G2, and Eo_D3 is conserved in the genes for vertebrate ADAM ( A disintegrin and metalloproteinase) protein disintegrinlike domains and within the gene for the medium-size snake disintegrins halystatins 2 and 3. However, a comparative analysis of currently available disintegrin(-like) genes outlines the view that a minimization of both the gene organization and the protein structure underlies the evolution of the snake venom disintegrin family.
- Subjects :
- Macrovipera lebetina transmediterranea
genomic DNA
MESH: Sequence Homology, Amino Acid
MESH: Introns
Disintegrins
[SDV]Life Sciences [q-bio]
MESH: Viperidae
MESH: Amino Acid Sequence
MESH: Base Sequence
Viperidae
MESH: Animals
MESH: Genetic Variation
MESH: Phylogeny
Phylogeny
Sequence Deletion
Genetics
0303 health sciences
biology
030302 biochemistry & molecular biology
MESH: DNA
MESH: Sequence Deletion
Snake venom
RNA splicing
embryonic structures
MESH: Viper Venoms
Macrovipera lebetina
MESH: DNA Primers
endocrine system
DNA, Complementary
Sequence analysis
Molecular Sequence Data
MESH: Sequence Alignment
Viper Venoms
03 medical and health sciences
intronless gene
Disintegrin
Animals
Amino Acid Sequence
intron sequence
MESH: Disintegrins
Molecular Biology
Gene
Ecology, Evolution, Behavior and Systematics
030304 developmental biology
DNA Primers
MESH: Molecular Sequence Data
Base Sequence
Sequence Homology, Amino Acid
urogenital system
disintegrin evolution
Intron
Genetic Variation
DNA
MESH: DNA, Complementary
biology.organism_classification
Introns
carbohydrates (lipids)
Echis ocellatus
biology.protein
Sequence Alignment
Subjects
Details
- Language :
- English
- ISSN :
- 00222844 and 14321432
- Database :
- OpenAIRE
- Journal :
- Journal of Molecular Evolution, Journal of Molecular Evolution, Springer Verlag, 2007, 64 (2), pp.261-271. ⟨10.1007/s00239-006-0161-4⟩
- Accession number :
- edsair.doi.dedup.....c3e35e992ca4a7c9b45e326362f32bbf