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TET2-mediated 5-hydroxymethylcytosine induces genetic instability and mutagenesis

Authors :
Lise Secardin
William Vainchenker
Olivier Bernard
Alexander A. Ishchenko
Murat Saparbaev
Emna Mahfoudhi
Philippe Rameau
Véronique Della Valle
Ibtissam Talhaoui
Isabelle Plo
Xenia Cabagnols
Salem Abbes
Hématopoïèse normale et pathologique (UMR 1170 )
Université Paris-Sud - Paris 11 (UP11) - Institut Gustave Roussy (IGR) - Institut National de la Santé et de la Recherche Médicale (INSERM)
Laboratoire d'hématologie moléculaire et cellulaire, institut Pasteur de Tunis
Institut Pasteur de Tunis - Réseau International des Instituts Pasteur
Institut Gustave Roussy (IGR)
Réparation de l’ADN (CNRS UMR 8200)
This work was supported by grants from Agence Nationale de la Recherche (ANR-Blanc 2013 GERMPN) to IP and [ANR Blanc 2010 Project ANR-10-BLAN-1617] to IP and MS, Association pour la Recherche contre le Cancer (ARC) (ARC libre 2012) to IP, Electricité de France (http://www.edf.fr) RB 2014-26 to MS and Fondation de France (http://www.fondationdefrance.org) [#2012 00029161] to AAI. Labex GR-Ex (IP, WV) is funded by the program 'Investissements d’avenir'. EM was funded by INSERM/DGRST then a grant from Institut Pasteur from Tunis, Tunisia. LS were supported by Ph.D grants from the Cancéropôle Région Ile de France (DIM cellule souche). XC was supported by Ph.D MENRT grant. IT was supported by postdoctoral fellowship from the Fondation ARC (http://www.arc-cancer.net) PDF20110603195.
ANR-Blanc 2013 GERMPN, GERMPN
ANR-10-BLAN-1617, EPIGENOME, Formation, dynamics and epigenetic functions of 5-hydroxymethylcytosine residues in DNA.(2010)
Hématopoïèse normale et pathologique (U1170 Inserm)
Université Paris-Sud - Paris 11 (UP11)-Institut Gustave Roussy (IGR)-Institut National de la Santé et de la Recherche Médicale (INSERM)
Université de Tunis El Manar (UTM)
Laboratoire d'hématologie moléculaire et cellulaire (LR11IPT07)
Institut Pasteur de Tunis
Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP)
Stabilité Génétique et Oncogenèse (UMR 8200)
Université Paris-Sud - Paris 11 (UP11)-Institut Gustave Roussy (IGR)-Centre National de la Recherche Scientifique (CNRS)
Plateforme imagerie et cytométrie (PFIC)
Analyse moléculaire, modélisation et imagerie de la maladie cancéreuse (AMMICa)
Centre National de la Recherche Scientifique (CNRS)-Université Paris-Sud - Paris 11 (UP11)-Institut Gustave Roussy (IGR)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Université Paris-Sud - Paris 11 (UP11)-Institut Gustave Roussy (IGR)-Institut National de la Santé et de la Recherche Médicale (INSERM)
Laboratoire d'Hématologie, Institut Pasteur de Tunis
This work was supported by grants from Agence Nationale de la Recherche (ANR-Blanc 2013 GERMPN) to IP and [ANR Blanc 2010 Project ANR-10-BLAN-1617] to IP and MS, Association pour la Recherche contre le Cancer (ARC) (ARC libre 2012) to IP, Electricité de France (http://www.edf.fr) RB 2014-26 to MS and Fondation de France (http://www.fondationdefrance.org) [#2012 00029161] to AAI. Labex GR-Ex (IP, WV) is funded by the program 'Investissements d’avenir'. EM was funded by INSERM/DGRST then a grant from Institut Pasteur from Tunis, Tunisia. LS were supported by Ph.D grants from the Cancéropôle Région Ile de France (DIM cellule souche). XC was supported by Ph.D MENRT grant. IT was supported by postdoctoral fellowship from the Fondation ARC.
We thank the cytometry platform of Gustave Roussy (Y. Lecluse).
ANR-10-BLAN-1617,EPIGENOME,Formation, dynamics and epigenetic functions of 5-hydroxymethylcytosine residues in DNA.(2010)
ANR-13-JSV1-0007,GERMPN,Etude des cas familiaux de néoplasmes myéloproliférifs: recherche des anomalies génétiques et de leurs fonctions.(2013)
Pasteur Tunis, Institut
BLANC - Formation, dynamics and epigenetic functions of 5-hydroxymethylcytosine residues in DNA. - - EPIGENOME2010 - ANR-10-BLAN-1617 - BLANC - VALID
Jeunes Chercheuses et Jeunes Chercheurs - Etude des cas familiaux de néoplasmes myéloproliférifs: recherche des anomalies génétiques et de leurs fonctions. - - GERMPN2013 - ANR-13-JSV1-0007 - JC - VALID
Université Paris-Sud - Paris 11 (UP11)-Institut Gustave Roussy (IGR)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Université Paris-Sud - Paris 11 (UP11)-Institut Gustave Roussy (IGR)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)
Source :
DNA Repair, DNA Repair, Elsevier, 2016, 43, pp.78-88. <10.1016/j.dnarep.2016.05.031>, DNA Repair, Elsevier, 2016, 43, pp.78-88. ⟨10.1016/j.dnarep.2016.05.031⟩, DNA Repair, 2016, 43, pp.78-88. ⟨10.1016/j.dnarep.2016.05.031⟩
Publication Year :
2016
Publisher :
Elsevier BV, 2016.

Abstract

International audience; The family of Ten-Eleven Translocation (TET) proteins is implicated in the process of active DNA demethy-lation and thus in epigenetic regulation. TET 1, 2 and 3 proteins are oxygenases that can hydroxylate 5-methylcytosine (5-mC) into 5-hydroxymethylcytosine (5-hmC) and further oxidize 5-hmC into 5-formylcytosine (5-fC) and 5-carboxylcytosine (5-caC). The base excision repair (BER) pathway removes the resulting 5-fC and 5-caC bases paired with a guanine and replaces them with regular cytosine. The question arises whether active modification of 5-mC residues and their subsequent elimination could affect the genomic DNA stability. Here, we generated two inducible cell lines (Ba/F3-EPOR, and UT7) over-expressing wild-type or catalytically inactive human TET2 proteins. Wild-type TET2 induction resulted in an increased level of 5-hmC and a cell cycle defect in S phase associated with higher level of phospho-rylated P53, chromosomal and centrosomal abnormalities. Furthermore, in a thymine-DNA glycosylase (Tdg) deficient context, the TET2-mediated increase of 5-hmC induces mutagenesis characterized by GC &gt; AT transitions in CpG context suggesting a mutagenic potential of 5-hmC metabolites. Altogether, these data suggest that TET2 activity and the levels of 5-hmC and its derivatives should be tightly controlled to avoid genetic and chromosomal instabilities. Moreover, TET2-mediated active demethylation might be a very dangerous process if used to entirely demethylate the genome and might rather be used only at specific loci.

Subjects

Subjects :
0301 basic medicine
DNA Repair
Genetic instability
MESH: Fibroblasts/cytology
MESH: Tumor Suppressor Protein p53/metabolism
MESH: Fibroblasts/metabolism
MESH: Mutagenesis
MESH: Base Sequence
MESH: Thymine DNA Glycosylase/deficiency
Biochemistry
MESH: DNA Repair
Epigenesis, Genetic
S Phase
MESH: Thymine DNA Glycosylase/genetics
Mice
chemistry.chemical_compound
MESH: Genomic Instability
MESH: DNA-Binding Proteins/genetics
MESH: B-Lymphocytes/metabolism
MESH: Animals
MESH: Cytosine/metabolism
MESH: Epigenesis, Genetic
MESH: Megakaryocyte Progenitor Cells/cytology
MESH: B-Lymphocytes/cytology
B-Lymphocytes
[SDV.MHEP] Life Sciences [q-bio]/Human health and pathology
MESH: Cytosine/analogs & derivatives
MESH: S Phase
Base excision repair
DNA-Binding Proteins
MESH: Proto-Oncogene Proteins/genetics
5-hmC
CpG site
5-Methylcytosine
[SDV.BBM.GTP] Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN]
Cytosine
Guanine
MESH: Hydroxylation
TDG
Cell cycle
Biology
MESH: DNA-Binding Proteins/metabolism
Hydroxylation
Genomic Instability
Cell Line
Dioxygenases
03 medical and health sciences
MESH: Tumor Suppressor Protein p53/genetics
[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN]
Proto-Oncogene Proteins
Animals
Humans
MESH: Mice
[SDV.BC] Life Sciences [q-bio]/Cellular Biology
Molecular Biology
Megakaryocyte Progenitor Cells
MESH: 5-Methylcytosine/analogs & derivatives
5-Hydroxymethylcytosine
TET2
MESH: Humans
Base Sequence
MESH: Proto-Oncogene Proteins/metabolism
Mutagenesis
MESH: 5-Methylcytosine/metabolism
Cell Biology
Fibroblasts
Molecular biology
Thymine DNA Glycosylase
MESH: Cell Line
030104 developmental biology
DNA demethylation
chemistry
DNA glycosylase
MESH: Megakaryocyte Progenitor Cells/metabolism
Tumor Suppressor Protein p53

Details

ISSN :
15687864
Volume :
43
Database :
OpenAIRE
Journal :
DNA Repair
Accession number :
edsair.doi.dedup.....c62d059a77d68707fe91ef4741f2a19f
Full Text :
https://doi.org/10.1016/j.dnarep.2016.05.031