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Soil protistology rebooted: 30 fundamental questions to start with

Authors :
Geisen, Stefan
Mitchell, Edward A.D.
Wilkinson, David M.
Adl, Sina
Bonkowski, Michael
Brown, Matthew W
Fiore-Donno, Anna Maria
Heger, Thierry J.
Jassey, Vincent E.J.
Krashevska, Valentyna
Lahr, Daniel J.G.
Marcisz, Katarzyna
Mulot, Matthieu
Payne, Richard
Singer, David
Anderson, O. Roger
Charman, Dan J.
Ekelund, Flemming
Griffiths, Bryan S.
Rønn, Regin
Smirnov, Alexey
Bass, David
Belbahri, Lassaâd
Berney, Cédric
Blandenier, Quentin
Chatzinotas, Antonis
Clarholm, Marianne
Dunthorn, Micah
Feest, Alan
Fernández, Leonardo D.
Foissner, Wilhelm
Fournier, Bertrand
Gentekaki, Eleni
Hájek, Michal
Helder, Johannes
Jousset, Alexandre
Koller, Robert
Kumar, Santosh
La Terza, Antonietta
Lamentowicz, Mariusz
Mazei, Yuri
Santos, Susana S.
Seppey, Christophe V.W.
Spiegel, Frederick W.
Walochnik, Julia
Winding, Anne
Lara, Enrique
Sub Ecology and Biodiversity
Ecology and Biodiversity
Wageningen University and Research Centre [Wageningen] (WUR)
Université de Neuchâtel (UNINE)
Schlumberger-Doll Research
Schlumberger
University of Saskatchewan [Saskatoon] (U of S)
Department of Terrestrial Ecology, Institut of Zoology
University of Cologne
Institute of Botany and Landscape Ecology
Universität Greifswald - University of Greifswald
Laboratoire Ecologie Fonctionnelle et Environnement (ECOLAB)
Université Toulouse III - Paul Sabatier (UT3)
Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Observatoire Midi-Pyrénées (OMP)
Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP)
Université Fédérale Toulouse Midi-Pyrénées
Instituto de Biociências, Universidade de São Paulo
Laboratory of Wetland Ecology and Monitoring, Faculty of Geographical and Geological Sciences
Adam Mickiewicz University in Poznan (AMUP)
Laboratory of Soil Biodiversity
Manchester Metropolitan University (MMU)
Department of Biology
Northern Arizona University [Flagstaff]
Crop and Soil Systems Research Group
Scotland's Rural College (SCUR)
The Natural History Museum [London] (NHM)
Laboratory of Soil Biology
Evolution des Protistes et Ecosystèmes Pélagiques (EPEP)
Adaptation et diversité en milieu marin (ADMM)
Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Station biologique de Roscoff [Roscoff] (SBR)
Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Station biologique de Roscoff [Roscoff] (SBR)
Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)
University of Kaiserslautern [Kaiserslautern]
Laboratoire de biodiversité du sol [Neuchâtel]
Faculty of Computer Science
Dalhousie University [Halifax]
Czech University of Life Sciences Prague
Johann-Friedrich Blumenbach Institut für Zoologie und Anthropologie
Georg-August-University [Göttingen]
Laboratoire Agronomie et Environnement (LAE)
Institut National de la Recherche Agronomique (INRA)-Université de Lorraine (UL)
French Institute of Pondichery
Laboratory of Wetland Ecology and Monitoring
Faculty of Geographical and Geological Sciences, Adam Mickiewicz University
Erasmus University Medical Center [Rotterdam] (Erasmus MC)
Center for Pathophysiology
NERI
Sub Ecology and Biodiversity
Ecology and Biodiversity
Terrestrial Ecology (TE)
Wageningen University and Research [Wageningen] (WUR)
Department of Biological Sciences [Mississippi]
University of Southern Mississippi (USM)
Institut Ecologie et Environnement (INEE)
Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Toulouse III - Paul Sabatier (UT3)
Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP)
Adam Mickiewicz University in Poznań (UAM)
Lamont-Doherty Earth Observatory of Columbia University, Palisades, New York 10964 USA
Geography Department, College of Life and Environmental Sciences
University of Exeter
Scotland's Rural College (SRUC)
University of Copenhagen = Københavns Universitet (KU)
Department of Invertebrate Zoology
St Petersburg State University (SPbU)
Adaptation et diversité en milieu marin (AD2M)
Station biologique de Roscoff [Roscoff] (SBR)
Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Station biologique de Roscoff [Roscoff] (SBR)
Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)
Helmholtz Zentrum für Umweltforschung = Helmholtz Centre for Environmental Research (UFZ)
Southern Swedish Forest Research Centre
Swedish University of Agricultural Sciences (SLU)
Czech University of Life Sciences Prague (CZU)
Forschungszentrum Jülich GmbH | Centre de recherche de Juliers
Helmholtz-Gemeinschaft = Helmholtz Association
Laboratoire Ecologie Fonctionnelle et Environnement (LEFE)
Université de Toulouse (UT)-Université de Toulouse (UT)-Observatoire Midi-Pyrénées (OMP)
Institut de Recherche pour le Développement (IRD)-Université Toulouse III - Paul Sabatier (UT3)
Université de Toulouse (UT)-Université de Toulouse (UT)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP)
Université de Toulouse (UT)
Georg-August-University = Georg-August-Universität Göttingen
University of Copenhagen = Københavns Universitet (UCPH)
Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut Ecologie et Environnement (INEE)
Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP)
Université Fédérale Toulouse Midi-Pyrénées-Observatoire Midi-Pyrénées (OMP)
Institut de Recherche pour le Développement (IRD)-Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Université Fédérale Toulouse Midi-Pyrénées-Institut de Recherche pour le Développement (IRD)-Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)
Source :
Geisen, S, Mitchell, E A D, Wilkinson, D M, Adl, S, Bonkowski, M, Brown, M W, Fiore-Donno, A M, Heger, T J, Jassey, V E J, Krashevska, V, Lahr, D J G, Marcisz, K, Mulot, M, Payne, R, Singer, D, Anderson, O R, Charman, D J, Ekelund, F, Griffiths, B S, Rønn, R, Smirnov, A, Bass, D, Belbahri, L, Berney, C, Blandenier, Q, Chatzinotas, A, Clarholm, M, Dunthorn, M, Feest, A, Fernández, L D, Foissner, W, Fournier, B, Gentekaki, E, Hajek, M, Helder, J, Jousset, A, Koller, R, Kumar, S, La Terza, A, Lamentowicz, M, Mazei, Y, Santos, S S, Seppey, C V W, Spiegel, F W, Walochnik, J, Winding, A & Lara, E 2017, ' Soil protistology rebooted : 30 fundamental questions to start with ', Soil Biology & Biochemistry, vol. 111, pp. 94-103 . https://doi.org/10.1016/j.soilbio.2017.04.001, Soil Biology and Biochemistry, 111, 94. Elsevier Limited, Soil Biology and Biochemistry, Soil Biology and Biochemistry, Elsevier, 2017, 111, pp.94-103. ⟨10.1016/j.soilbio.2017.04.001⟩, Geisen, S, Mitchell, E A D, Wilkinson, D M, Adl, S, Bonkowski, M, Brown, M W, Fiore-Donno, A M, Heger, T J, Jassey, V E J, Krashevska, V, Lahr, D J G, Marcisz, K, Mulot, M, Payne, R, Singer, D, Anderson, O R, Charman, D J, Ekelund, F, Griffiths, B S, Rønn, R, Smirnov, A, Bass, D, Belbahri, L, Berney, C, Blandenier, Q, Chatzinotas, A, Clarholm, M, Dunthorn, M, Feest, A, Fernández, L D, Foissner, W, Fournier, B, Gentekaki, E, Hájek, M, Helder, J, Jousset, A, Koller, R, Kumar, S, La Terza, A, Lamentowicz, M, Mazei, Y, Santos, S S, Seppey, C V W, Spiegel, F W, Walochnik, J, Winding, A & Lara, E 2017, ' Soil protistology rebooted : 30 fundamental questions to start with ', Soil Biology & Biochemistry, vol. 111, pp. 94-103 . https://doi.org/10.1016/j.soilbio.2017.04.001, Soil biology & biochemistry 111, 94-103 (2017). doi:10.1016/j.soilbio.2017.04.001, Soil Biology and Biochemistry, 111, 94-103, Soil Biology & Biochemistry, 111, 94-103. Elsevier B.V., Soil Biology and Biochemistry 111 (2017), Soil Biology and Biochemistry, 2017, 111, pp.94-103. ⟨10.1016/j.soilbio.2017.04.001⟩
Publication Year :
2017
Publisher :
Elsevier BV, 2017.

Abstract

Protists are the most diverse eukaryotes. These microbes are keystone organisms of soil ecosystems and regulate essential processes of soil fertility such as nutrient cycling and plant growth. Despite this, protists have received little scientific attention, especially compared to bacteria, fungi and nematodes in soil studies. Recent methodological advances, particularly in molecular biology techniques, have made the study of soil protists more accessible, and have created a resurgence of interest in soil protistology. This ongoing revolution now enables comprehensive investigations of the structure and functioning of soil protist communities, paving the way to a new era in soil biology. Instead of providing an exhaustive review, we provide a synthesis of research gaps that should be prioritized in future studies of soil protistology to guide this rapidly developing research area. Based on a synthesis of expert opinion we propose 30 key questions covering a broad range of topics including evolution, phylogenetics, functional ecology, macroecology, paleoecology, and methodologies. These questions highlight a diversity of topics that will establish soil protistology as a hub discipline connecting different fundamental and applied fields such as ecology, biogeography, evolution, plant-microbe interactions, agronomy, and conservation biology. We are convinced that soil protistology has the potential to be one of the most exciting frontiers in biology. (C) 2017 Elsevier Ltd. All rights reserved.

Details

ISSN :
00380717
Volume :
111
Database :
OpenAIRE
Journal :
Soil Biology and Biochemistry
Accession number :
edsair.doi.dedup.....c6eb3159b42e5a83dade62619e9aeec3