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tensorBF: an R package for Bayesian tensor factorization
- Publication Year :
- 2016
- Publisher :
- Cold Spring Harbor Laboratory, 2016.
-
Abstract
- With recent advancements in measurement technologies, many multi-way and tensor datasets have started to emerge. Exploiting the natural tensor structure in the data has been shown to be advantageous for both explorative and predictive studies in several application areas of bioinformatics and computational biology. Therefore, there has subsequently arisen a need for robust and flexible tools for effectively analyzing tensor data sets. We present the R package tensorBF, which is the first R package providing Bayesian factorization of a tensor. Our package implements a generative model that automatically identifies the number of factors needed to explain the tensor, overcoming a key limitation of traditional tensor factorizations. We also recommend best practices when using tensor factorizations for both, explorative and predictive analysis with an example application on drug response dataset. The package also implements tools related to the normalization of data, informative noise priors and visualization. Availability: The package is available at https://cran.r-project.org/package=tensorBF.
- Subjects :
- Normalization (statistics)
0303 health sciences
business.industry
Computer science
05 social sciences
Bayesian probability
050401 social sciences methods
computer.software_genre
Machine learning
Visualization
03 medical and health sciences
Generative model
0504 sociology
Factorization
Tensor (intrinsic definition)
Prior probability
Data mining
Tensor
Artificial intelligence
Noise (video)
business
computer
030304 developmental biology
Subjects
Details
- Database :
- OpenAIRE
- Accession number :
- edsair.doi.dedup.....ca53ca33f377e48c4a233a339fa5184a
- Full Text :
- https://doi.org/10.1101/097048