Development of new SNPs loci on Quercus robur and Quercus petraea for genetic studies covering the whole species’ distribution range

Authors :: Erwan Guichoux
Malte Mader
Céline Blanc-Jolivet
Ruslan Yu. Yanbaev
Svetlana Bakhtina
Bernd Degen
Yulai Yanbaev
Thünen Institute of Forest Genetics
Bashkirian Agrarian University
Biodiversité, Gènes & Communautés (BioGeCo)
Université de Bordeaux (UB)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
ANR-10-EQPX-0016,XYLOFOREST,Plateforme d'Innovation ' Forêt-Bois-Fibre-Biomasse du Futur '(2010)
Source :: Conservation Genetics Resources, Conservation Genetics Resources, Springer, In press, pp.1-4. ⟨10.1007/s12686-020-01141-z⟩
Publication Year :: 2020
Publisher :: HAL CCSD, 2020.
Abstract: We used double digest restriction site associated DNA sequencing (ddRAD) to develop new geographically informative nuclear SNP loci in Quercus robur and Quercus petraea. Genotypes derived from sequence data of 95 individuals covering the distribution range of the species were analysed to select geographically informative and polymorphic loci within Russia and Germany. We successfully screened a selected set of 119 loci on a MassARRAY® iPLEX™ platform on 190 individuals from 19 locations in Russia. The newly developed loci will be useful for genetic studies over the whole distribution range of both species.

Language :: English
ISSN :: 18777252 and 18777260
Database :: OpenAIRE
Journal :: Conservation Genetics Resources, Conservation Genetics Resources, Springer, In press, pp.1-4. ⟨10.1007/s12686-020-01141-z⟩
Accession number :: edsair.doi.dedup.....d05c036885c5888a4b99e366f42813b5
Full Text :: https://doi.org/10.1007/s12686-020-01141-z⟩

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