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Give me a sample of air and I will tell which species are found from your region : Molecular identification of fungi from airborne spore samples

Authors :
Panu Halme
Veera Norros
Panu Somervuo
Heini Ali-Kovero
Otso Ovaskainen
Nerea Abrego
Department of Agricultural Sciences
Spatial Foodweb Ecology Group
Research Centre for Ecological Change
Biosciences
Organismal and Evolutionary Biology Research Programme
Ecology and Evolutionary Biology
Otso Ovaskainen / Principal Investigator
Plant Production Sciences
Publication Year :
2018

Abstract

Fungi are a megadiverse group of organisms, they play major roles in ecosystem functioning and are important for human health, food production and nature conservation. Our knowledge on fungal diversity and fungal ecology is however still very limited, in part because surveying and identifying fungi is time demanding and requires expert knowledge. We present a method that allows anyone to generate a list of fungal species likely to occur in a region of interest, with minimal effort and without requiring taxonomical expertise. The method consists of using a cyclone sampler to acquire fungal spores directly from the air to an Eppendorf tube, and applying DNA barcoding with probabilistic species identification to generate a list of species from the sample. We tested the feasibility of the method by acquiring replicate air samples from different geographical regions within Finland. Our results show that air sampling is adequate for regionalā€level surveys, with samples collected >100 km apart varying but samples collected

Details

Language :
English
Database :
OpenAIRE
Accession number :
edsair.doi.dedup.....d44f439812be5ae2c88ecab1b4957712