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Give me a sample of air and I will tell which species are found from your region : Molecular identification of fungi from airborne spore samples
- Publication Year :
- 2018
-
Abstract
- Fungi are a megadiverse group of organisms, they play major roles in ecosystem functioning and are important for human health, food production and nature conservation. Our knowledge on fungal diversity and fungal ecology is however still very limited, in part because surveying and identifying fungi is time demanding and requires expert knowledge. We present a method that allows anyone to generate a list of fungal species likely to occur in a region of interest, with minimal effort and without requiring taxonomical expertise. The method consists of using a cyclone sampler to acquire fungal spores directly from the air to an Eppendorf tube, and applying DNA barcoding with probabilistic species identification to generate a list of species from the sample. We tested the feasibility of the method by acquiring replicate air samples from different geographical regions within Finland. Our results show that air sampling is adequate for regionalālevel surveys, with samples collected >100 km apart varying but samples collected
- Subjects :
- 0106 biological sciences
0301 basic medicine
BACTERIAL
Biodiversity
Air Microbiology
DIVERSITY
molecular identification
LANDSCAPE SCALE
01 natural sciences
DNA barcoding
COMMUNITY COMPOSITION
ekosysteemit
TEMPORAL VARIABILITY
molecular biology
molekyylibiologia
Finland
tunnistaminen
2. Zero hunger
alue-ekologia
OUTDOOR AIR
Ecology
Sampling (statistics)
Replicate
Spores, Fungal
ekosysteemipalvelut
1181 Ecology, evolutionary biology
Seasons
recognition
sienet
ecosystems
Biotechnology
regional ecology
Sample (material)
SHORT DISTANCES
Biology
spore
010603 evolutionary biology
03 medical and health sciences
Species Specificity
Genetics
DNA Barcoding, Taxonomic
fungal sampling method
Ecosystem
Ecology, Evolution, Behavior and Systematics
Molecular identification
WOOD-INHABITING FUNGI
Fungi
15. Life on land
atmospheric diversity
ATMOSPHERE
Spore
ekosysteemit (ekologia)
fungal diversity
030104 developmental biology
fungal survey
1182 Biochemistry, cell and molecular biology
fungi
DISPERSAL LIMITATION
ecosystem services
Subjects
Details
- Language :
- English
- Database :
- OpenAIRE
- Accession number :
- edsair.doi.dedup.....d44f439812be5ae2c88ecab1b4957712