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Would an RRS by any other name sound as RAD?
- Publication Year :
- 2018
- Publisher :
- Cold Spring Harbor Laboratory, 2018.
-
Abstract
- Sampling markers throughout a genome with restriction enzymes emerged in the 2000s as reduced representation shotgun sequencing (RRS). Rapid advances in sequencing technology have since spurred modifications of RRS, giving rise to many derivatives with unique names, such as RADseq. But naming conventions have often been more creative than consistent, with unclear criteria for recognition as a unique method resulting in a proliferation of names characterized by ambiguity. We conducted a literature review to assess methodological and etymological relationships among 36 restriction enzyme-based methods, as well as rates of correct referencing of commonly-used methods. We identify several instances of methodological convergence or misattribution in the literature, and note that many published derivatives have modified only minor elements of parent protocols. We urge greater restraint in naming derivative methods, to strike a better balance between clarity, recognition of scientific innovation, and correct attribution.
- Subjects :
- 0106 biological sciences
0303 health sciences
Shotgun sequencing
Computer science
business.industry
Genomics
computer.software_genre
010603 evolutionary biology
01 natural sciences
Genome
03 medical and health sciences
Restriction enzyme
Artificial intelligence
business
computer
Natural language processing
030304 developmental biology
Subjects
Details
- Database :
- OpenAIRE
- Accession number :
- edsair.doi.dedup.....d681d392339fb63fa410c0bd4b558f33
- Full Text :
- https://doi.org/10.1101/283085