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PRR11 unveiled as a top candidate biomarker within the RBM3‐regulated transcriptome in pancreatic cancer

Authors :
Emelie Karnevi
Sara Wahlin
William M. Gallagher
Sophie Cervin
Bruce Moran
Sofie Olsson Hau
Jakob Eberhard
Vilgot Falk
Jacob Elebro
Karin Jirström
Björn Nodin
Source :
The Journal of Pathology: Clinical Research, Vol 8, Iss 1, Pp 65-77 (2022), The Journal of Pathology: Clinical Research
Publication Year :
2022
Publisher :
Wiley, 2022.

Abstract

The outlook for patients with pancreatic cancer remains dismal. Treatment options are limited and chemotherapy remains standard of care, leading to only modest survival benefits. Hence, there is a great need to further explore the mechanistic basis for the intrinsic therapeutic resistance of this disease, and to identify novel predictive biomarkers. RNA‐binding motif protein 3 (RBM3) has emerged as a promising biomarker of disease severity and chemotherapy response in several types of cancer, including pancreatic cancer. The aim of this study was to unearth RBM3‐regulated genes and proteins in pancreatic cancer cells in vitro, and to examine their expression and prognostic significance in human tumours. Next‐generation RNA sequencing was applied to compare transcriptomes of MIAPaCa‐2 cells with and without RBM3 knockdown. The prognostic value of differentially expressed genes (DEGs) was examined in The Cancer Genome Atlas (TCGA). Top deregulated genes were selected for further studies in vitro and for immunohistochemical analysis of corresponding protein expression in tumours from a clinically well‐annotated consecutive cohort of 46 patients with resected pancreatic cancer. In total, 19 DEGs (p

Details

Language :
English
ISSN :
20564538
Volume :
8
Issue :
1
Database :
OpenAIRE
Journal :
The Journal of Pathology: Clinical Research
Accession number :
edsair.doi.dedup.....d78c5350aa45a87b0b6dcde3e4ceb965