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InsteaDMatic: Towards cross-platform automated continuous rotation electron diffraction
- Source :
- Journal of Applied Crystallography
- Publication Year :
- 2019
- Publisher :
- arXiv, 2019.
-
Abstract
- A DigitalMicrograph script named InsteaDMatic has been developed for automated continuous rotation electron diffraction (cRED) data acquisition. InsteaDMatic coordinates functions of the transmission electron microscope goniometer and camera in order to tune up diffraction-frame recording simultaneously with crystal rotation. Exploiting fast and automated data collection, the influence of the electron dose rate on the quality of cRED data was studied, and structural models obtained for two different parallel-beam illumination modes (aperture selection and nanoprobe) were compared.<br />A DigitalMicrograph script, InsteaDMatic, has been developed to facilitate rapid automated 3D electron diffraction/microcrystal electron diffraction data acquisition by continuous rotation of a crystal with a constant speed, denoted as continuous rotation electron diffraction. The script coordinates microscope functions, such as stage rotation, and camera functions relevant for data collection, and stores the experiment metadata. The script is compatible with any microscope that can be controlled by DigitalMicrograph and has been tested on both JEOL and Thermo Fisher Scientific microscopes. A proof of concept has been performed through employing InsteaDMatic for data collection and structure determination of a ZSM-5 zeolite. The influence of illumination settings and electron dose rate on the quality of diffraction data, unit-cell determination and structure solution has been investigated in order to optimize the data acquisition procedure.
- Subjects :
- Diffraction
Microscope
Materials science
continuous rotation electron diffraction
ComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISION
FOS: Physical sciences
02 engineering and technology
010402 general chemistry
01 natural sciences
General Biochemistry, Genetics and Molecular Biology
law.invention
Crystal
Optics
Data acquisition
microED
law
microcrystal electron diffraction
Condensed Matter - Materials Science
Data collection
business.industry
DigitalMicrograph scripts
Materials Science (cond-mat.mtrl-sci)
021001 nanoscience & nanotechnology
Research Papers
3D electron diffraction
structure determination
0104 chemical sciences
3DED
Electron diffraction
Proof of concept
cRED
automated data collection
0210 nano-technology
business
Rotation (mathematics)
Subjects
Details
- Database :
- OpenAIRE
- Journal :
- Journal of Applied Crystallography
- Accession number :
- edsair.doi.dedup.....d97cfdb9986f3d24da9396b1c85b2879
- Full Text :
- https://doi.org/10.48550/arxiv.1911.09393