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RBP2GO: a comprehensive pan-species database on RNA-binding proteins, their interactions and functions

Authors :
Sven Diederichs
Ralf E Jansen
Elsa Wassmer
Maïwen Caudron-Herger
Source :
Nucleic Acids Research
Publication Year :
2020
Publisher :
Oxford University Press (OUP), 2020.

Abstract

RNA–protein complexes have emerged as central players in numerous key cellular processes with significant relevance in health and disease. To further deepen our knowledge of RNA-binding proteins (RBPs), multiple proteome-wide strategies have been developed to identify RBPs in different species leading to a large number of studies contributing experimentally identified as well as predicted RBP candidate catalogs. However, the rapid evolution of the field led to an accumulation of isolated datasets, hampering the access and comparison of their valuable content. Moreover, tools to link RBPs to cellular pathways and functions were lacking. Here, to facilitate the efficient screening of the RBP resources, we provide RBP2GO (https://RBP2GO.DKFZ.de), a comprehensive database of all currently available proteome-wide datasets for RBPs across 13 species from 53 studies including 105 datasets identifying altogether 22 552 RBP candidates. These are combined with the information on RBP interaction partners and on the related biological processes, molecular functions and cellular compartments. RBP2GO offers a user-friendly web interface with an RBP scoring system and powerful advanced search tools allowing forward and reverse searches connecting functions and RBPs to stimulate new research directions.<br />Graphical Abstract Graphical AbstractRBP2GO (https://RBP2GO.DKFZ.de) is a comprehensive database of all currently available proteome-wide datasets for RNA-binding proteins, their functions and interaction partners.Question: is it necessary to have a caption for the graphical abstract? I cannot see them on the website or PDFs of the articles.

Details

ISSN :
13624962 and 03051048
Volume :
49
Database :
OpenAIRE
Journal :
Nucleic Acids Research
Accession number :
edsair.doi.dedup.....db5df7009e8d3e4d7d50ef3d4f687b59
Full Text :
https://doi.org/10.1093/nar/gkaa1040