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RBP2GO: a comprehensive pan-species database on RNA-binding proteins, their interactions and functions
- Source :
- Nucleic Acids Research
- Publication Year :
- 2020
- Publisher :
- Oxford University Press (OUP), 2020.
-
Abstract
- RNA–protein complexes have emerged as central players in numerous key cellular processes with significant relevance in health and disease. To further deepen our knowledge of RNA-binding proteins (RBPs), multiple proteome-wide strategies have been developed to identify RBPs in different species leading to a large number of studies contributing experimentally identified as well as predicted RBP candidate catalogs. However, the rapid evolution of the field led to an accumulation of isolated datasets, hampering the access and comparison of their valuable content. Moreover, tools to link RBPs to cellular pathways and functions were lacking. Here, to facilitate the efficient screening of the RBP resources, we provide RBP2GO (https://RBP2GO.DKFZ.de), a comprehensive database of all currently available proteome-wide datasets for RBPs across 13 species from 53 studies including 105 datasets identifying altogether 22 552 RBP candidates. These are combined with the information on RBP interaction partners and on the related biological processes, molecular functions and cellular compartments. RBP2GO offers a user-friendly web interface with an RBP scoring system and powerful advanced search tools allowing forward and reverse searches connecting functions and RBPs to stimulate new research directions.<br />Graphical Abstract Graphical AbstractRBP2GO (https://RBP2GO.DKFZ.de) is a comprehensive database of all currently available proteome-wide datasets for RNA-binding proteins, their functions and interaction partners.Question: is it necessary to have a caption for the graphical abstract? I cannot see them on the website or PDFs of the articles.
- Subjects :
- endocrine system
Scoring system
Proteome
AcademicSubjects/SCI00010
Statistics as Topic
RNA-binding protein
Biology
computer.software_genre
User-Computer Interface
03 medical and health sciences
0302 clinical medicine
Species Specificity
Genetics
Humans
Database Issue
Databases, Protein
030304 developmental biology
0303 health sciences
Database
Gene ontology
Cellular pathways
RNA-Binding Proteins
Reproducibility of Results
Gene Ontology
Pan Species
computer
030217 neurology & neurosurgery
Protein Binding
Subjects
Details
- ISSN :
- 13624962 and 03051048
- Volume :
- 49
- Database :
- OpenAIRE
- Journal :
- Nucleic Acids Research
- Accession number :
- edsair.doi.dedup.....db5df7009e8d3e4d7d50ef3d4f687b59
- Full Text :
- https://doi.org/10.1093/nar/gkaa1040