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Single-Cell Sequencing Revealed Pivotal Genes Related to Prognosis of Myocardial Infarction Patients

Authors :
Jiamin Zhou
Tong Wen
Qing Li
Zhixin Chen
Xiaoping Peng
Chunying Wei
Yunfeng Wei
Jingtian Peng
Wei Zhang
Source :
Computational and Mathematical Methods in Medicine. 2022:1-15
Publication Year :
2022
Publisher :
Hindawi Limited, 2022.

Abstract

Objectives. Myocardial infarction (MI) is a common cardiovascular disease. Histopathology is a main molecular characteristic of MI, but often, differences between various cell subsets have been neglected. Under this premise, MI-related molecular biomarkers were screened using single-cell sequencing. Methods. This work examined immune cell abundance in normal and MI samples from GSE109048 and determined differences in the activated mast cells and activated CD4 memory T cells, resting mast cells. Weighted gene coexpression network analysis (WGCNA) demonstrated that activated CD4 memory T cells were the most closely related to the turquoise module, and 10 hub genes were screened. Single-cell sequencing data (scRNA-seq) of MI were examined. We used t -distributed stochastic neighbor embedding ( t -SNE) for cell clustering. Results. We obtained 8 cell subpopulations, each of which had different marker genes. 7 out of the 10 hub genes were detected by single-cell sequencing analysis. The expression quantity and proportion of the 7 genes were different in 8 cell clusters. Conclusion. In general, our study revealed the immune characteristics and determined 7 prognostic markers for MI at the single-cell level, providing a new understanding of the molecular characteristics and mechanism of MI.

Details

ISSN :
17486718 and 1748670X
Volume :
2022
Database :
OpenAIRE
Journal :
Computational and Mathematical Methods in Medicine
Accession number :
edsair.doi.dedup.....ddaeab3d07c1db2739cd915c7c7f5b58