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Ilumatobacter nonamiense sp. nov. and Ilumatobacter coccineum sp. nov., isolated from seashore sand
- Source :
- International Journal of Systematic and Evolutionary Microbiology. 63:3404-3408
- Publication Year :
- 2013
- Publisher :
- Microbiology Society, 2013.
-
Abstract
- Bacterial strains YM16-303T and YM16-304T were isolated from a sample of seashore sand using a medium with an artificial seawater base. Both isolates grew slowly on marine agar, and were found to be Gram-reaction-positive, aerobic, non-motile and rod-shaped. The cell-wall peptidoglycan contained ll-diaminopimelic acid, glycine, alanine and hydroxyglutamic acid, and the acyl type of the muramic acid was glycolyl. The predominant menaquinone was MK-9(H8). The 16S rRNA gene sequences of strains YM16-303T and YM16-304T were most similar to that of Ilumatobacter fluminis YM22-133T, and phylogenetic analyses also indicated that they belong to the genus Ilumatobacter . Ilumatobacter fluminis YM22-133T and strains YM16-303T and YM16-304T should be classified as distinct species in the genus Ilumatobacter , however, since the 16S rRNA gene sequence similarity between them was low and the major cellular fatty acids and some physiological properties were different. Moreover, average nucleotide identity and maximal unique exact matches index values also supported the conclusion that they represent different species. On the basis of the above analyses, two novel species, Ilumatobacter nonamiense sp. nov. (type strain YM16-303T = NBRC 109120T = KCTC 29139T) and Ilumatobacter coccineum sp. nov. (type strain YM16-304T = NBRC 103263T = KCTC 29153T), are proposed. The order Acidimicrobiales , which contains the genus Ilumatobacter , currently includes six genera and only six species, and they are phylogenetically very far from each other. Phylogenetic analyses revealed that strains YM16-303T and YM16-304T clustered with closely related uncultured actinobacteria but not Ilumatobacter fluminis YM22-133T, suggesting that many uncultured bacteria related to these isolates exist in the environment. This is the first report on interspecies relationships in the order Acidimicrobiales .
- Subjects :
- DNA, Bacterial
Molecular Sequence Data
Peptidoglycan
Muramic acid
Biology
medicine.disease_cause
Microbiology
Actinobacteria
chemistry.chemical_compound
Japan
Genus
RNA, Ribosomal, 16S
Botany
medicine
Seawater
Phylogeny
Ecology, Evolution, Behavior and Systematics
Base Composition
Phylogenetic tree
Strain (chemistry)
Fatty Acids
Nucleic Acid Hybridization
Vitamin K 2
Sequence Analysis, DNA
General Medicine
Silicon Dioxide
biology.organism_classification
16S ribosomal RNA
Bacterial Typing Techniques
chemistry
Ilumatobacter fluminis
Subjects
Details
- ISSN :
- 14665034 and 14665026
- Volume :
- 63
- Database :
- OpenAIRE
- Journal :
- International Journal of Systematic and Evolutionary Microbiology
- Accession number :
- edsair.doi.dedup.....e2d546e5e7bb274af63bfd2bd551def8
- Full Text :
- https://doi.org/10.1099/ijs.0.047316-0