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Human Proteinpedia enables sharing of human protein data

Authors :
Ron Bose
Jean-Charles Sanchez
Young Jin Lee
Marcus Bantscheff
Pia Hønnerup Jensen
Yunping Zhu
Jonathan C. Trinidad
Juan Martínez-Heredia
Michael Moran
Samir K. Brahmachari
Pierre Gagné
Kripa Shankari
Jeffrey C. Smith
Jose-Manuel Vidal-Taboada
James P. DeLany
Shi Jun Sheng
Ragna Rönnholm
Xosé R. Bustelo
Helene L. Cardasis
Erik Björling
Ole N. Jensen
Pavel Gromov
Michael J. Dunn
Xiaoyue Wang
Guy G. Poirier
Greg T. Cantin
Richard J. Simpson
Kenny Helsens
Ming Zhou
Sumio Sugano
Samir M. Hanash
Prashantha Hebbar
Y. L. Ramachandra
Jennifer E. Van Eyk
Rafael Oliva
Philip C. Andrews
Lennart Martens
Julio E. Celis
B. Abdul Rahiman
Alexander Mehrle
Feixia Chu
Richard D. Smith
Philip A. Cole
Leroi V. DeSouza
Stefan Wiemann
Joseph A. Loo
Bernhard Kuster
Mauno Vihinen
Peter Jung
David C. Muddiman
Jayson A. Falkner
Osamu Ohara
Fredrik Levander
Gerald W. Hart
Mukhtar Ahmed
T. S. Keshava Prasad
Eric W. Deutsch
Riaz Mohmood
Indu Kheterpal
Jeffrey M. Gimble
John R. Yates
Catherine Fenselau
Timothy D. Veenstra
Julian Vasilescu
Brian M. Balgley
Heiko Hermeking
Johanna Salonen
Rainer Pepperkok
Michael Lefevre
William S. Hancock
Visith Thongboonkerd
Tao Xu
Beerelli Seshi
Christine A. Miller
Florian Gnad
Ravi Sirdeshmukh
Arnaud Droit
Renu Goel
Maarit Takatalo
Emanuel F. Petricoin
Mathias Uhlén
Vitor M. Faça
Billy Wu
Robert J. Cotter
Angelo M. De Marzo
Mark E. McComb
Alma S Burlingame
Oliver Hofmann
Martine Morzel
Rajasree Menon
Denis F. Hochstrasser
Peter James
Matthew J. Sullivan
Robin Wait
K. W. Michael Siu
H. C. Harsha
Hainard Alexandre
Megan S. Lim
Winston Hide
Kris Gevaert
Harald Mischak
Thierry Sayd
Matthias Mann
Blagoy Blagoev
Gerard Cagney
Xiangming Fang
Ralph H. Hruban
James D. Morgan
Joel S. Bader
Samuel O. Purvine
Fuchu He
Robert Moritz
Rob M. Ewing
Daniel Figeys
Min-Seok Kwon
Kumaran Kandasamy
Reiko F. Kikuno
Masaaki Oyama
Cecilia Gelfi
Gilbert S. Omenn
James P. McRedmond
Pierre Lescuyer
Kojo S.J. Elenitoba-Johnson
Akhilesh Pandey
Joël Vandekerckhove
Karin Hjernø
Subburaman Mohan
Jens Rick
Kyla Pennington
Raghothama Chaerkady
Henrik Molina
David M Horn
Faith A. Hays
Young Ki Paik
Balamurugan Periaswamy
Giulio Superti-Furga
Roman Körner
Gerard Drewes
Jun Zhong
E. Dransfield
Suresh Mathivanan
Robert H. Rice
David K. Crockett
Thomas A. Neubert
Minna Lehvaslaiho
K. Shivakumar
Catherine E. Costello
Hyoung Joo Lee
Christian Löbke
Keiryn L. Bennett
Nieves Ibarrola
Ramars Amanchy
Petra Zürbig
Vivekananda Shetty
Natalie G. Ahn
Ulrike Korf
J. Daniel Navarro
Anuradha Nalli
Prasanna Ramachandran
David J. States
Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science
La Trobe University
Biological Systems Engineering
University of Wisconsin-Madison
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, 1090 Vienna, Austria
Royal Institute of Technology [Stockholm] (KTH )
University of California [San Francisco] (UC San Francisco)
University of California (UC)
Boston University School of Medicine (BUSM)
Boston University [Boston] (BU)
Radiothérapie moléculaire (UMR 1030)
Université Paris-Sud - Paris 11 (UP11)-Institut Gustave Roussy (IGR)-Institut National de la Santé et de la Recherche Médicale (INSERM)
Qualité des Produits Animaux (QuaPA)
Institut National de la Recherche Agronomique (INRA)
Université Laval [Québec] (ULaval)
British Antarctic Survey (BAS)
Natural Environment Research Council (NERC)
Chemistry and Biochemistry Department (University of Maryland)
University of Maryland [College Park]
University of Maryland System-University of Maryland System
Ottawa Institute of Systems Biology
University of Ottawa [Ottawa]
Cabinet de Médecine Générale (Cabinet PG)
Ville
Flanders Institute for Biotechnology
Beijing Institute of Radiation medicine
South African National Bioinformatics Institute (SANBI)
University of the Western Cape (UWC)
Département de science des protéines humaines [Genève]
Université de Genève = University of Geneva (UNIGE)-Faculté de médecine [Genève]
Donders Institute for Brain, Cognition and Behaviour
Radboud University [Nijmegen]
Fraunhofer German-Sino Lab for Mobile Communications (MCI)
Fraunhofer Institute for Manufacturing Engineering and Automation (Fraunhofer IPA)
Fraunhofer (Fraunhofer-Gesellschaft)-Fraunhofer (Fraunhofer-Gesellschaft)
Max Planck Institute for Human Cognitive and Brain Sciences [Leipzig] (IMPNSC)
Max-Planck-Gesellschaft
Technische Universität Munchen - Université Technique de Munich [Munich, Allemagne] (TUM)
Hôpitaux Universitaires de Genève (HUG)
Department of Pathology
University of Utah
University of California [Los Angeles] (UCLA)
Universiteit Gent = Ghent University (UGENT)
Protein Analysis for Clinical Diagnosis and Pharmaceutical Research
Mosaiques Diagnostics and Therapeutics AG
Proteomics Resource Center
Rockfeller University
Auteur indépendant
Section des Sciences de la Terre
Université de Genève = University of Geneva (UNIGE)
RIKEN Research Center for Allergy and Immunology, Yokohama (RCAI)
Research Unit for Immune Homeostasis
Yonsei Proteome Research Center and Department of Biochemistry
Yonsei University
European Molecular Biology Laboratory [Heidelberg] (EMBL)
Department of Molecular Pathology and Microbiology
Center for Applied Proteomics and Molecular Medicine-George Mason University [Fairfax]
Axe cancer
Université Laval [Québec] (ULaval)-CHUQ Research Center
The University of Arizona Medical Center
University of Arizona
The University of Tokyo (UTokyo)
Research Center for Molecular Medicine of the Austrian Academy of Sciences [Vienna, Austria] (CeMM )
Austrian Academy of Sciences (OeAW)
Faculty of Biological and Environmental Sciences [Helsinki]
Helsingin yliopisto = Helsingfors universitet = University of Helsinki
Medical Molecular Biology Unit
Mahidol University [Bangkok]
National Cancer Institute [Bethesda] (NCI-NIH)
National Institutes of Health [Bethesda] (NIH)
Department of Experimental Medical Science
Lund University [Lund]
Tsinghua University [Beijing] (THU)
Deutsches Krebsforschungszentrum
Institut d’Électronique, de Microélectronique et de Nanotechnologie - UMR 8520 (IEMN)
Centrale Lille-Institut supérieur de l'électronique et du numérique (ISEN)-Université de Valenciennes et du Hainaut-Cambrésis (UVHC)-Université de Lille-Centre National de la Recherche Scientifique (CNRS)-Université Polytechnique Hauts-de-France (UPHF)
Institut Européen des membranes (IEM)
Université Montpellier 2 - Sciences et Techniques (UM2)-Ecole Nationale Supérieure de Chimie de Montpellier (ENSCM)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)
Mosaiques Diagnostics & Therapeutics AG
University of California [San Francisco] (UCSF)
University of California
Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut Gustave Roussy (IGR)-Université Paris-Sud - Paris 11 (UP11)
University of the Western Cape
Université de Genève (UNIGE)-Faculté de médecine [Genève]
Radboud university [Nijmegen]
Universiteit Gent = Ghent University [Belgium] (UGENT)
University of Geneva [Switzerland]
University of Helsinki
Université Montpellier 2 - Sciences et Techniques (UM2)-Ecole Nationale Supérieure de Chimie de Montpellier (ENSCM)-Institut de Chimie du CNRS (INC)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)
Hochstrasser, Denis
Lescuyer, Pierre
Moritz, Robert
Pepperkok, Rainer
Sanchez, Jean-Charles
Source :
Mathivanan, S, Ahmed, M, Ahn, N G, Alexandre, H, Amanchy, R, Andrews, P C, Bader, J S, Balgley, B M, Bantscheff, M, Bennett, K L, Björling, E, Blagoev, B, Bose, R, Brahmachari, S K, Burlingame, A S, Bustelo, X R, Cagney, G, Cantin, G T, Cardasis, H L, Celis, J E, Chaerkady, R, Chu, F, Cole, P A, Costello, C E, Cotter, R J, Crockett, D, DeLany, J P, De Marzo, A M, DeSouza, L V, Deutsch, E W, Dransfield, E, Drewes, G, Droit, A, Dunn, M J, Elenitoba-Johnson, K, Ewing, R M, Van Eyk, J, Faca, V, Falkner, J, Fang, X, Fenselau, C, Figeys, D, Gagné, P, Gelfi, C, Gevaert, K, Gimble, J M, Gnad, F, Goel, R, Gromov, P, Hanash, S M, Hancock, W S, Harsha, H C, Hart, G, Hays, F, He, F, Hebbar, P, Helsens, K, Hermeking, H, Hide, W, Hjernø, K, Hochstrasser, D F, Hofmann, O, Horn, D M, Hruban, R H, Ibarrola, N, James, P, Jensen, O N, Jensen, P H, Jung, P, Kandasamy, K, Kheterpal, I, Kikuno, R F, Korf, U, Körner, R, Kuster, B, Kwon, M-S, Lee, H-J, Lee, Y-J, Lefevre, M, Lehvaslaiho, M, Lescuyer, P, Levander, F, Lim, M S, Löbke, C, Loo, J A, Mann, M, Martens, L, Martinez-Heredia, J, McComb, M, McRedmond, J, Mehrle, A, Menon, R, Miller, C A, Mischak, H, Mohan, S S, Mohmood, R, Molina, H, Moran, M F, Morgan, J D, Moritz, R, Morzel, M, Muddiman, D C, Nalli, A, Navarro, J D, Neubert, T A, Ohara, O, Oliva, R, Omenn, G S, Oyama, M, Paik, Y-K, Pennington, K, Pepperkok, R, Periaswamy, B, Petricoin, E F, Poirier, G G, Prasad, T S K, Purvine, S O, Rahiman, B A, Ramachandran, P, Ramachandra, Y L, Rice, R H, Rick, J, Ronnholm, R H, Salonen, J, Sanchez, J-C, Sayd, T, Seshi, B, Shankari, K, Sheng, S J, Shetty, V, Shivakumar, K, Simpson, R J, Sirdeshmukh, R, Siu, K W M, Smith, J C, Smith, R D, States, D J, Sugano, S, Sullivan, M, Superti-Furga, G, Takatalo, M, Thongboonkerd, V, Trinidad, J C, Uhlen, M, Vandekerckhove, J, Vasilescu, J, Veenstra, T D, Vidal-Taboada, J-M, Vihinen, M, Wait, R, Wang, X, Wiemann, S, Wu, B, Xu, T, Yates, J R, Zhong, J, Zhou, M, Zhu, Y, Zurbig, P & Pandey, A 2008, ' Human Proteinpedia enables sharing of human protein data ', Nature Biotechnology, vol. 26, no. 2, pp. 164-167 . https://doi.org/10.1038/nbt0208-164, Nature Biotechnology, Nature Biotechnology, 2008, 26 (2), pp.164-167. ⟨10.1038/nbt0208-164⟩, Nature Biotechnology, Nature Publishing Group, 2008, 26 (2), pp.164-167. ⟨10.1038/nbt0208-164⟩, Nature Biotechnology, Vol. 26, No 2 (2008) pp. 164-167
Publication Year :
2008

Abstract

Proteomic technologies, such as yeast two-hybrid, mass spectrometry (MS), protein/peptide arrays and fluorescence microscopy, yield multi-dimensional data sets, which are often quite large and either not published or published as supplementary information that is not easily searchable. Without a system in place for standardizing and sharing data, it is not fruitful for the biomedical community to contribute these types of data to centralized repositories.

Details

Language :
English
ISSN :
10870156
Database :
OpenAIRE
Journal :
Mathivanan, S, Ahmed, M, Ahn, N G, Alexandre, H, Amanchy, R, Andrews, P C, Bader, J S, Balgley, B M, Bantscheff, M, Bennett, K L, Björling, E, Blagoev, B, Bose, R, Brahmachari, S K, Burlingame, A S, Bustelo, X R, Cagney, G, Cantin, G T, Cardasis, H L, Celis, J E, Chaerkady, R, Chu, F, Cole, P A, Costello, C E, Cotter, R J, Crockett, D, DeLany, J P, De Marzo, A M, DeSouza, L V, Deutsch, E W, Dransfield, E, Drewes, G, Droit, A, Dunn, M J, Elenitoba-Johnson, K, Ewing, R M, Van Eyk, J, Faca, V, Falkner, J, Fang, X, Fenselau, C, Figeys, D, Gagné, P, Gelfi, C, Gevaert, K, Gimble, J M, Gnad, F, Goel, R, Gromov, P, Hanash, S M, Hancock, W S, Harsha, H C, Hart, G, Hays, F, He, F, Hebbar, P, Helsens, K, Hermeking, H, Hide, W, Hjernø, K, Hochstrasser, D F, Hofmann, O, Horn, D M, Hruban, R H, Ibarrola, N, James, P, Jensen, O N, Jensen, P H, Jung, P, Kandasamy, K, Kheterpal, I, Kikuno, R F, Korf, U, Körner, R, Kuster, B, Kwon, M-S, Lee, H-J, Lee, Y-J, Lefevre, M, Lehvaslaiho, M, Lescuyer, P, Levander, F, Lim, M S, Löbke, C, Loo, J A, Mann, M, Martens, L, Martinez-Heredia, J, McComb, M, McRedmond, J, Mehrle, A, Menon, R, Miller, C A, Mischak, H, Mohan, S S, Mohmood, R, Molina, H, Moran, M F, Morgan, J D, Moritz, R, Morzel, M, Muddiman, D C, Nalli, A, Navarro, J D, Neubert, T A, Ohara, O, Oliva, R, Omenn, G S, Oyama, M, Paik, Y-K, Pennington, K, Pepperkok, R, Periaswamy, B, Petricoin, E F, Poirier, G G, Prasad, T S K, Purvine, S O, Rahiman, B A, Ramachandran, P, Ramachandra, Y L, Rice, R H, Rick, J, Ronnholm, R H, Salonen, J, Sanchez, J-C, Sayd, T, Seshi, B, Shankari, K, Sheng, S J, Shetty, V, Shivakumar, K, Simpson, R J, Sirdeshmukh, R, Siu, K W M, Smith, J C, Smith, R D, States, D J, Sugano, S, Sullivan, M, Superti-Furga, G, Takatalo, M, Thongboonkerd, V, Trinidad, J C, Uhlen, M, Vandekerckhove, J, Vasilescu, J, Veenstra, T D, Vidal-Taboada, J-M, Vihinen, M, Wait, R, Wang, X, Wiemann, S, Wu, B, Xu, T, Yates, J R, Zhong, J, Zhou, M, Zhu, Y, Zurbig, P & Pandey, A 2008, ' Human Proteinpedia enables sharing of human protein data ', Nature Biotechnology, vol. 26, no. 2, pp. 164-167 . https://doi.org/10.1038/nbt0208-164, Nature Biotechnology, Nature Biotechnology, 2008, 26 (2), pp.164-167. ⟨10.1038/nbt0208-164⟩, Nature Biotechnology, Nature Publishing Group, 2008, 26 (2), pp.164-167. ⟨10.1038/nbt0208-164⟩, Nature Biotechnology, Vol. 26, No 2 (2008) pp. 164-167
Accession number :
edsair.doi.dedup.....e4d4ec2da9e21964853baaa48a5e228f
Full Text :
https://doi.org/10.1038/nbt0208-164