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Deep learning fully convolution network for lumen characterization in diabetic patients using carotid ultrasound: a tool for stroke risk

Authors :
Aditya Sharma
Venkatanareshbabu Kuppili
Harman S. Suri
Jasjit S. Suri
Damodar Reddy Edla
Mainak Biswas
Elisa Cuadrado-Godia
Andrew N. Nicolaides
John R. Laird
Luca Saba
Source :
Medical & Biological Engineering & Computing. 57:543-564
Publication Year :
2018
Publisher :
Springer Science and Business Media LLC, 2018.

Abstract

Manual ultrasound (US)-based methods are adapted for lumen diameter (LD) measurement to estimate the risk of stroke but they are tedious, error prone, and subjective causing variability. We propose an automated deep learning (DL)-based system for lumen detection. The system consists of a combination of two DL systems: encoder and decoder for lumen segmentation. The encoder employs a 13-layer convolution neural network model (CNN) for rich feature extraction. The decoder employs three up-sample layers of fully convolution network (FCN) for lumen segmentation. Three sets of manual tracings were used during the training paradigm leading to the design of three DL systems. Cross-validation protocol was implemented for all three DL systems. Using the polyline distance metric, the precision of merit for three DL systems over 407 US scans was 99.61%, 97.75%, and 99.89%, respectively. The Jaccard index and Dice similarity of DL lumen segmented region against three ground truth (GT) regions were 0.94, 0.94, and 0.93 and 0.97, 0.97, and 0.97, respectively. The corresponding AUC for three DL systems was 0.95, 0.91, and 0.93. The experimental results demonstrated superior performance of proposed deep learning system over conventional methods in literature. Graphical abstract ᅟ.

Details

ISSN :
17410444 and 01400118
Volume :
57
Database :
OpenAIRE
Journal :
Medical & Biological Engineering & Computing
Accession number :
edsair.doi.dedup.....e536da2412ad79e8f125bf042a400d03
Full Text :
https://doi.org/10.1007/s11517-018-1897-x