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Author Correction: Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors

Authors :
Anne Lise Børresen-Dale
Vessela N. Kristensen
Bina P. Pandey
Hans Kristian Moen Vollan
Jonas Demeulemeester
Peter J. Campbell
David C. Wedge
Graham R. Bignell
Michael R. Stratton
Yves Moreau
Silje Nord
Gro Nilsen
Jason J. Pitt
Kevin P. White
Ole Christian Lingjærde
Hege G. Russnes
Jiqiu Cheng
Peter Van Loo
Source :
Nature Communications, Nature Communications, Vol 9, Iss 1, Pp 1-1 (2018), Nature Communications, Vol 10, Iss 1, Pp 1-1 (2019)
Publication Year :
2018
Publisher :
Nature Publishing Group UK, 2018.

Abstract

Homozygous deletions are rare in cancers and often target tumour suppressor genes. Here, we build a compendium of 2218 primary tumours across 12 human cancer types and systematically screen for homozygous deletions, aiming to identify rare tumour suppressors. Our analysis defines 96 genomic regions recurrently targeted by homozygous deletions. These recurrent homozygous deletions occur either over tumour suppressors or over fragile sites, regions of increased genomic instability. We construct a statistical model that separates fragile sites from regions showing signatures of positive selection for homozygous deletions and identify candidate tumour suppressors within those regions. We find 16 established tumour suppressors and propose 27 candidate tumour suppressors. Several of these genes (including MGMT, RAD17, and USP44) show prior evidence of a tumour suppressive function. Other candidate tumour suppressors, such as MAFTRR, KIAA1551, and IGF2BP2, are novel. Our study demonstrates how rare tumour suppressors can be identified through copy number meta-analysis.<br />Homozygous deletions are rare in cancers and often target tumour suppressor genes. Here, the authors conduct pan-cancer analyses and apply statistical modelling to identify 27 candidate tumour suppressors, including MAFTRR, KIAA1551, and IGF2BP2.

Details

Language :
English
ISSN :
20411723
Volume :
9
Database :
OpenAIRE
Journal :
Nature Communications
Accession number :
edsair.doi.dedup.....e5944796b3699480231bac4e32b3c61d