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Structural basis of the signalling through a bacterial membrane receptor HasR deciphered by an integrative approach

Authors :
Philippe Delepelaire
Gisele Cardoso de Amorim
Rémi Fronzes
Javier Pérez
Catherine Simenel
Gérard Pehau-Arnaudet
Muriel Delepierre
Idir Malki
Olga Roudenko
Alexandros Koutsioubas
Francesca Gubellini
Nadia Izadi-Pruneyre
Halina Wójtowicz
Ada Prochnicka-Chalufour
Résonance Magnétique Nucléaire des Biomolécules
Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS)
Synchrotron SOLEIL (SSOLEIL)
Centre National de la Recherche Scientifique (CNRS)
Centre de Recherche et Innovation Technologique (CITECH)
Institut Pasteur [Paris] (IP)
Biologie Structurale de la Sécrétion Bactérienne
Jülich Supercomputing Centre (JSC)
Forschungszentrum Jülich GmbH | Centre de recherche de Juliers
Helmholtz-Gemeinschaft = Helmholtz Association-Helmholtz-Gemeinschaft = Helmholtz Association
Institut de biologie physico-chimique (IBPC (FR_550))
Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)
This work was funded by the Institut Pasteur, the Centre National de la Recherche Scientifique (CNRS), two grants from the ANR (Agence Nationale de la Recherche) [grant numbers HEMESTOCKEXCHANGE 12-BSV3-0022-01 and HEMETRANS 08-BLAN-0160]
Equipement d'Excellence CACSICE and SOLEIL [grant number 2013448]. H.W. was funded by postdoctoral fellowships from the Mairie de Paris [grant number 2012-209].
We thank Emmanuel Frachon, from the Platform of Recombinant Protein of the Institut Pasteur, for bacterial cell production. We thank Dominique Durand and Patrice Vachette for the first SAXS measurements on HasR. We thank Florence Cordier and Bertrand Raynal for helpful discussions.
ANR-12-BSV3-0022,HEMESTOCKEXCHANGE,Hème et porphyrine chez des bactéries modèle: des fonctions aux mécanismes(2012)
ANR-08-BLAN-0160,HEMETRANS,Transfert et transport d'hème entre protéines et signalisation transmembranaire(2008)
ANR-11-EQPX-0008,CACSICE,Centre d'analyse de systèmes complexes dans les environnements complexes(2011)
ANR-12-BS08-0020,SynchroKin,Mise en place d'une technique expérimentale pour la mesure de données cinétiques et mécanistiques utilisant la radiation synchrotron SOLEIL(2012)
Centre National de la Recherche Scientifique (CNRS)-Institut Pasteur [Paris]
Institut Pasteur [Paris]
Institut Pasteur [Paris]-Centre National de la Recherche Scientifique (CNRS)
Source :
Biochemical Journal, Biochemical Journal, 2016, 473 (14), pp.2239-2248. ⟨10.1042/BCJ20160131⟩, Biochemical Journal, Portland Press, 2016, 473 (14), pp.2239-2248. ⟨10.1042/BCJ20160131⟩
Publication Year :
2016
Publisher :
Portland Press Ltd., 2016.

Abstract

In bacteria, some scarce nutrients are sensed, bound and internalized by their specific transporter. In the present study, using an integrative structural approach, we study HasR, a bacterial haem transporter in both its free and its loaded forms.<br />Bacteria use diverse signalling pathways to adapt gene expression to external stimuli. In Gram-negative bacteria, the binding of scarce nutrients to membrane transporters triggers a signalling process that up-regulates the expression of genes of various functions, from uptake of nutrient to production of virulence factors. Although proteins involved in this process have been identified, signal transduction through this family of transporters is not well understood. In the present study, using an integrative approach (EM, SAXS, X-ray crystallography and NMR), we have studied the structure of the haem transporter HasR captured in two stages of the signalling process, i.e. before and after the arrival of signalling activators (haem and its carrier protein). We show for the first time that the HasR domain responsible for signal transfer: (i) is highly flexible in two stages of signalling; (ii) extends into the periplasm at approximately 70–90 Å (1 Å=0.1 nm) from the HasR β-barrel; and (iii) exhibits local conformational changes in response to the arrival of signalling activators. These features would favour the signal transfer from HasR to its cytoplasmic membrane partners.

Details

ISSN :
14708728 and 02646021
Volume :
473
Database :
OpenAIRE
Journal :
Biochemical Journal
Accession number :
edsair.doi.dedup.....e59464d87fdd7a534e2e8c8d2d39bd8f