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Complete genome sequence and in silico analysis of L. interrogans Canicola strain DU114: a virulent Brazilian isolate phylogenetically related to serovar Linhai
- Source :
- Repositório Institucional da USP (Biblioteca Digital da Produção Intelectual), Universidade de São Paulo (USP), instacron:USP
- Publication Year :
- 2019
-
Abstract
- Canine leptospirosis is often caused by Leptospira interrogans serovar Canicola. Infected dogs may become asymptomatic carriers of the pathogen, which leads to many public health concerns. In this work, we present the complete genome sequencing and in silico analysis from a virulent Brazilian strain of L. interrogans serovar Canicola, previously isolated from a stray dog in Sao Paulo City. Comparative genomic analysis with a reference genome allowed identification of 1031 INDELs and several arrangement variations. Out of 35,361 SNPs identified, 6780 were missense mutations and 16,114 were synonymous mutations. The Gene Ontology terms more affected by mutations were described. Interestingly, phylogenetic analyses indicated a genetic relatedness of the isolate with serovar Linhai strain 56,609. In addition, we found several virulence-related genes and main outer membrane proteins associated with pathogenesis. This genomic information about canine isolates may help to elucidate the molecular diversity and mechanisms of Leptospira spp. pathogenicity.
- Subjects :
- 0106 biological sciences
Virulence Factors
Virulence
Genomics
Leptospira interrogans serovar canicola
Polymorphism, Single Nucleotide
01 natural sciences
03 medical and health sciences
GENÉTICA BACTERIANA
Leptospira
Genetics
Gene
Phylogeny
030304 developmental biology
Whole genome sequencing
0303 health sciences
biology
biology.organism_classification
Gene Ontology
Leptospira interrogans
Synonymous substitution
Brazil
Genome, Bacterial
010606 plant biology & botany
Reference genome
Subjects
Details
- Database :
- OpenAIRE
- Journal :
- Repositório Institucional da USP (Biblioteca Digital da Produção Intelectual), Universidade de São Paulo (USP), instacron:USP
- Accession number :
- edsair.doi.dedup.....e5a9c32d12d2b29b0086a87129b527a8