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Diverse Genetic Landscape of Suspected Retinitis Pigmentosa in a Large Korean Cohort
- Source :
- Genes, Volume 12, Issue 5, Genes, Vol 12, Iss 675, p 675 (2021)
- Publication Year :
- 2021
- Publisher :
- Multidisciplinary Digital Publishing Institute, 2021.
-
Abstract
- We conducted targeted next-generation sequencing (TGS) and/or whole exome sequencing (WES) to assess the genetic profiles of clinically suspected retinitis pigmentosa (RP) in the Korean population. A cohort of 279 unrelated Korean patients with clinically diagnosed RP and available family members underwent molecular analyses using TGS consisting of 88 RP-causing genes and/or WES with clinical variant interpretation. The combined genetic tests (TGS and/or WES) found a mutation in the 44 RP-causing genes and seven inherited retinal disease (IRD)-causing genes, and the total mutation detection rate was 57%. The mutation detection rate was higher in patients who experienced visual deterioration at a younger age (75.4%, age of symptom onset under 10 years) and who had a family history of RP (70.7%). The most common causative genes were EYS (8.2%), USH2A (6.8%), and PDE6B (4.7%), but mutations were dispersed among the 51 RP/IRD genes generally. Meanwhile, the PDE6B mutation was the most common in patients experiencing initial symptoms in their first decade, EYS in their second to third decades, and USH2A in their fifth decades and older. Of note, WES revealed some unexpected genotypes: ABCC6, CHM, CYP4V2, RS1, TGFBI, VPS13B, and WDR19, which were verified by ophthalmological re-phenotyping.
- Subjects :
- Adult
Male
medicine.medical_specialty
Genotype
inherited retinal diseases
QH426-470
Article
whole exome sequencing
Gene Frequency
targeted next-generation sequencing
Internal medicine
retinitis pigmentosa
Republic of Korea
Retinitis pigmentosa
Genetics
Humans
Medicine
Family history
Eye Proteins
Genetics (clinical)
Exome sequencing
Aged
Cyclic Nucleotide Phosphodiesterases, Type 6
Extracellular Matrix Proteins
business.industry
Middle Aged
medicine.disease
VPS13B
Mutation (genetic algorithm)
Cohort
Female
business
TGFBI
Subjects
Details
- Language :
- English
- ISSN :
- 20734425
- Database :
- OpenAIRE
- Journal :
- Genes
- Accession number :
- edsair.doi.dedup.....e654d6ee6e02cb0692ff245b14f05a6a
- Full Text :
- https://doi.org/10.3390/genes12050675