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Fimbriiglobus ruber gen. nov., sp. nov., a Gemmata-like planctomycete from Sphagnum peat bog and the proposal of Gemmataceae fam. nov
- Publication Year :
- 2017
-
Abstract
- An aerobic, budding, dark pink to red-pigmented bacterium was isolated from an acidic boreal Sphagnum peat bog and designated strain SP5T. Cells of this strain were non-motile spheres that were uniformly covered with crateriform pits and fimbria, and tended to form aggregates during growth in liquid media. Strain SP5T was capable of growth between pH 4.0 and pH 6.8 (optimum at pH 5.5–6.0) and at temperatures between 10 and 30 °C (optimum at 20–25 °C). The preferred growth substrates were sugars and some heteropolysaccharides. The major fatty acids were C20 : 1 ω9c, C16 : 1 ω9c and C16 : 0, and the major polar lipid was trimethylornithine. Cells contained also significant amounts of bound (ω-1)OH-C30 : 1 fatty acid. The quinone was menaquinone-6, and the G+C content of the DNA was 60.7 mol%. Strain SP5T was a member of the order Planctomycetales and belonged to the phylogenetic lineage defined by the genus Gemmata . It displayed 88 and 89 % 16S rRNA gene sequence similarity to Gemmata obscuriglobusUQM 2246T and ‘ Gemmata massiliana’ IIL30, 89 % to Zavarzinella formosa A10T and 86 % to Telmatocola sphagniphila SP2T. However, strain SP5T differed from members of these genera by cell morphology, substrate utilization pattern and fatty acid composition. Based on these data, the novel isolate should be considered as representing a novel species of a new genus of planctomycetes, for which the name Fimbriiglobus ruber gen. nov., sp. nov, is proposed. The type strain is SP5T (=LMG 29572T=VKM B-3045T). We also suggest the establishment of a novel family, Gemmataceaefam. nov., which includes the phylogenetically related genera Gemmata , Zavarzinella , Telmatocola and Fimbriiglobus .
- Subjects :
- 0301 basic medicine
DNA, Bacterial
Ornithine
030106 microbiology
Biology
Cell morphology
Microbiology
03 medical and health sciences
Genus
Phylogenetics
RNA, Ribosomal, 16S
Botany
Sphagnopsida
Ecology, Evolution, Behavior and Systematics
Phylogeny
Soil Microbiology
chemistry.chemical_classification
Base Composition
Pigmentation
Fatty Acids
Planctomycetes
Fatty acid
Vitamin K 2
General Medicine
Sequence Analysis, DNA
Ribosomal RNA
16S ribosomal RNA
biology.organism_classification
Bacterial Typing Techniques
Planctomycetales
030104 developmental biology
chemistry
Wetlands
Bacteria
Subjects
Details
- Language :
- English
- Database :
- OpenAIRE
- Accession number :
- edsair.doi.dedup.....e6791f54fd42f6b2920606d89e07263b