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Identification of a novel metabolism-related gene signature associated with the survival of bladder cancer
- Source :
- BMC Cancer, Vol 21, Iss 1, Pp 1-14 (2021), BMC Cancer
- Publication Year :
- 2021
- Publisher :
- Springer Science and Business Media LLC, 2021.
-
Abstract
- Background Bladder cancer (BC) is one of the most common malignancies and has a relatively poor outcome worldwide. In this study, we attempted to construct a novel metabolism-related gene (MRG) signature for predicting the survival probability of BC patients. Methods First, differentially expressed MRGs between BC and normal samples were identified and used to construct a protein-protein interaction (PPI) network and perform mutation analysis. Next, univariate Cox regression analysis was utilized to select prognostic genes, and multivariate Cox regression analysis was applied to establish an MRG signature for predicting the survival probability of BC patients. Moreover, Kaplan-Meier (KM) survival analysis and receiver operating characteristic (ROC) analysis were performed to evaluate the predictive capability of the MRG signature. Finally, a nomogram based on the MRG signature was established to better predict the survival of BC. Results In the present study, 27 differentially expressed MRGs were identified, most of which presented mutations in BC patients, and LRP1 showed the highest mutation rate. Next, an MRG signature, including MAOB, FASN and LRP1, was established by using univariate and multivariate Cox regression analysis. Furthermore, survival analysis indicated that BC patients in the high-risk group had a dramatically lower survival probability than those in the low-risk group. Finally, Cox regression analysis showed that the risk score was an independent prognostic factor, and a nomogram integrating age, pathological tumor stage and risk score was established and presented good predictive ability. Conclusion We successfully constructed a novel MRG signature to predict the prognosis of BC patients, which might contribute to the clinical treatment of BC.
- Subjects :
- Male
Oncology
Cancer Research
medicine.medical_specialty
Mutation rate
Multivariate statistics
Kaplan-Meier Estimate
Real-Time Polymerase Chain Reaction
Internal medicine
Databases, Genetic
Genetics
Humans
Medicine
Protein Interaction Maps
Monoamine Oxidase
RC254-282
Survival analysis
Proportional Hazards Models
Bladder cancer
Receiver operating characteristic
business.industry
Proportional hazards model
Research
Gene Expression Profiling
Age Factors
Univariate
Neoplasms. Tumors. Oncology. Including cancer and carcinogens
Middle Aged
TCGA
Nomogram
Metabolism-related gene
GEO
Prognosis
medicine.disease
Fatty Acid Synthase, Type I
Nomograms
Gene Ontology
ROC Curve
Urinary Bladder Neoplasms
Mutation
Female
Transcriptome
business
Low Density Lipoprotein Receptor-Related Protein-1
Subjects
Details
- ISSN :
- 14712407
- Volume :
- 21
- Database :
- OpenAIRE
- Journal :
- BMC Cancer
- Accession number :
- edsair.doi.dedup.....e739d0f8311d2df57521fc6b353a7869
- Full Text :
- https://doi.org/10.1186/s12885-021-09006-w