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Exploração botânica rápida e inovadora de um transecto de 320 km no leste da Amazônia usando código de barras de DNA

Authors :
William MILLIKEN
Guillaume ODONNE
Julien ENGEL
François-Michel LE TOURNEAU
Uxue SUESCUN
Jérôme CHAVE
Royal Botanic Gardens [Kew]
Laboratoire Ecologie, Evolution, Interactions des Systèmes amazoniens (LEEISA)
Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Université de Guyane (UG)-Centre National de la Recherche Scientifique (CNRS)
Botanique et Modélisation de l'Architecture des Plantes et des Végétations (UMR AMAP)
Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Sud])-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Université de Montpellier (UM)
Pôle de recherche pour l'organisation et la diffusion de l'information géographique (PRODIG (UMR_8586 / UMR_D_215 / UM_115))
Université Paris 1 Panthéon-Sorbonne (UP1)-Institut de Recherche pour le Développement (IRD)-AgroParisTech-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité)
Evolution et Diversité Biologique (EDB)
Institut de Recherche pour le Développement (IRD)-Université Toulouse III - Paul Sabatier (UT3)
Université de Toulouse (UT)-Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS)
Source :
Acta Amazonica v.52 n.1 2022, Acta Amazonica, Instituto Nacional de Pesquisas da Amazônia (INPA), instacron:INPA, Acta Amazonica, 2022, 52 (1), pp.29-37. ⟨10.1590/1809-4392202101413⟩, Acta Amazonica (0044-5967) (Inst Nacional Pesquisas Amazonia), 2022, Vol. 52, N. 1, P. 29-37
Publication Year :
2022
Publisher :
FapUNIFESP (SciELO), 2022.

Abstract

We explored a 320-km transect in the Tumucumaque mountain range along the border between southern French Guiana and Brazil, sampling all trees and lianas with DBH >= 10 cm in seven 25 x 25-m plots installed near seven boundary milestones. We isolated DNA from cambium tissue and sequenced two DNA barcodes (rbcLa and matK) to aid in species identification. We also collected fertile herbarium specimens from other species (trees/shrubs/herbs) inside and outside the plots. The selected DNA barcodes were useful at the family level but failed to identify specimens at the species level. Based on DNA barcoding identification, the most abundant families in the plots were Burseraceae, Fabaceae, Meliaceae, Moraceae, Myristicaceae and Sapotaceae. One third of the images of sampled plants posted on the iNaturalist website were identified by the community to species level. New approaches, including the sequencing of the ITS region and fast evolving DNA plastid regions, remain to be tested for their utility in the identification of specimens at lower taxonomic levels in floristic inventories in the Amazon region.<br />Um transecto de 320 km foi explorado na Serra do Tumucumaque, ao longo da fronteira entre o sul da Guiana Francesa e o Brasil por meio da amostragem de todas as arvores e lianas com DAP . 10 cm em sete parcelas de 25 x 25 m instaladas perto de sete marcos fronteiricos. Isolamos DNA de tecido cambial e sequenciamos dois codigos de barra de DNA (rbcLa e matK) para auxiliar na identificacao das especies. Tambem coletamos especimes de herbario ferteis de outras especies (arvores/ arbustos/ervas) dentro e fora das parcelas. Os codigos de barra de DNA selecionados foram uteis em nivel de familia, mas nao conseguiram identificar especimes em nivel de especie. Com base na identificacao de DNA barcoding, as familias mais abundantes nas parcelas foram Burseraceae, Fabaceae, Meliaceae, Moraceae, Myristicaceae e Sapotaceae. Um terco das imagens de plantas amostradas postadas no website iNaturalist foram identificadas em nivel de especie. Novas abordagens, incluindo o sequenciamento da regiao ITS e regioes de DNA plastidial de rapida evolucao, ainda precisam ser testadas quanto a sua utilidade na identificacao de especimes ate niveis taxonomicos mais baixos em inventarios floristicos na regiao amazonica. PALAVRAS-CHAVE: codigo de barras de DNA, fronteira Guiana Francesa-Brasil, inventario de arvores, matK, rbcLa, Tumucumaque

Details

ISSN :
18094392 and 00445967
Volume :
52
Database :
OpenAIRE
Journal :
Acta Amazonica
Accession number :
edsair.doi.dedup.....e78f000f1224f0da6ff11ee6ef231596
Full Text :
https://doi.org/10.1590/1809-4392202101413