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Natural Language Processing with Deep Learning for Medical Adverse Event Detection from Free-Text Medical Narratives: A Case Study of Detecting Total Hip Replacement Dislocation
- Publication Year :
- 2020
-
Abstract
- Background Accurate and timely detection of medical adverse events (AEs) from free-text medical narratives can be challenging. Natural language processing (NLP) with deep learning has already shown great potential for analyzing free-text data, but its application for medical AE detection has been limited. Method In this study, we developed deep learning based NLP (DL-NLP) models for efficient and accurate hip dislocation AE detection following primary total hip replacement from standard (radiology notes) and non-standard (follow-up telephone notes) free-text medical narratives. We benchmarked these proposed models with traditional machine learning based NLP (ML-NLP) models, and also assessed the accuracy of International Classification of Diseases (ICD) and Current Procedural Terminology (CPT) codes in capturing these hip dislocation AEs in a multi-center orthopaedic registry. Results All DL-NLP models outperformed all of the ML-NLP models, with a convolutional neural network (CNN) model achieving the best overall performance (Kappa = 0.97 for radiology notes, and Kappa = 1.00 for follow-up telephone notes). On the other hand, the ICD/CPT codes of the patients who sustained a hip dislocation AE were only 75.24% accurate. Conclusions We demonstrated that a DL-NLP model can be used in largescale orthopaedic registries for accurate and efficient detection of hip dislocation AEs. The NLP model in this study was developed with data from the most frequently used electronic medical record (EMR) system in the U.S., Epic. This NLP model could potentially be implemented in other Epic-based EMR systems to improve AE detection, and consequently, quality of care and patient outcomes.
- Subjects :
- 0301 basic medicine
FOS: Computer and information sciences
Computer Science - Machine Learning
Computer science
Arthroplasty, Replacement, Hip
Total hip replacement
Health Informatics
EPIC
computer.software_genre
Convolutional neural network
Machine Learning (cs.LG)
Computer Science - Information Retrieval
Machine Learning
03 medical and health sciences
0302 clinical medicine
Deep Learning
Dislocation (syntax)
Text messaging
Electronic Health Records
Humans
Cpt codes
Natural Language Processing
Computer Science - Computation and Language
business.industry
Deep learning
Computer Science Applications
030104 developmental biology
Current Procedural Terminology
Artificial intelligence
Neural Networks, Computer
business
computer
Computation and Language (cs.CL)
030217 neurology & neurosurgery
Natural language processing
Information Retrieval (cs.IR)
Subjects
Details
- Language :
- English
- Database :
- OpenAIRE
- Accession number :
- edsair.doi.dedup.....e7c78f0bdc83e9b9f5b65d6b3605eba4