Back to Search
Start Over
The ISB Cancer Genomics Cloud: A Flexible Cloud-Based Platform for Cancer Genomics Research
- Source :
- Cancer Research. 77:e7-e10
- Publication Year :
- 2017
- Publisher :
- American Association for Cancer Research (AACR), 2017.
-
Abstract
- The ISB Cancer Genomics Cloud (ISB-CGC) is one of three pilot projects funded by the National Cancer Institute to explore new approaches to computing on large cancer datasets in a cloud environment. With a focus on Data as a Service, the ISB-CGC offers multiple avenues for accessing and analyzing The Cancer Genome Atlas, TARGET, and other important references such as GENCODE and COSMIC using the Google Cloud Platform. The open approach allows researchers to choose approaches best suited to the task at hand: from analyzing terabytes of data using complex workflows to developing new analysis methods in common languages such as Python, R, and SQL; to using an interactive web application to create synthetic patient cohorts and to explore the wealth of available genomic data. Links to resources and documentation can be found at www.isb-cgc.org. Cancer Res; 77(21); e7–10. ©2017 AACR.
- Subjects :
- 0301 basic medicine
Cancer Research
SQL
Computer science
Datasets as Topic
Cloud computing
Bioinformatics
Article
03 medical and health sciences
0302 clinical medicine
Documentation
Neoplasms
Humans
Web application
computer.programming_language
Internet
Genome, Human
business.industry
GENCODE
Research
Computational Biology
Genomics
Cloud Computing
Data science
National Cancer Institute (U.S.)
United States
ComputingMethodologies_PATTERNRECOGNITION
030104 developmental biology
Workflow
Oncology
030220 oncology & carcinogenesis
Data as a service
business
computer
Software
Subjects
Details
- ISSN :
- 15387445 and 00085472
- Volume :
- 77
- Database :
- OpenAIRE
- Journal :
- Cancer Research
- Accession number :
- edsair.doi.dedup.....e99d034ec859484b79438a46797ec45e