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The ISB Cancer Genomics Cloud: A Flexible Cloud-Based Platform for Cancer Genomics Research

Authors :
Matthew Bookman
Suzanne M. Paquette
Varsha Dhankani
Michael Miller
Kalle Leinonen
Nicole A. Deflaux
Mark Backus
Todd Pihl
Madelyn Reyes
Sheila Reynolds
Joseph Slagel
Jonathan Bingham
David L Gibbs
David Pot
William J.R. Longabaugh
Abigail Hahn
Zack Rodebaugh
Ilya Shmulevich
Phyliss Lee
Source :
Cancer Research. 77:e7-e10
Publication Year :
2017
Publisher :
American Association for Cancer Research (AACR), 2017.

Abstract

The ISB Cancer Genomics Cloud (ISB-CGC) is one of three pilot projects funded by the National Cancer Institute to explore new approaches to computing on large cancer datasets in a cloud environment. With a focus on Data as a Service, the ISB-CGC offers multiple avenues for accessing and analyzing The Cancer Genome Atlas, TARGET, and other important references such as GENCODE and COSMIC using the Google Cloud Platform. The open approach allows researchers to choose approaches best suited to the task at hand: from analyzing terabytes of data using complex workflows to developing new analysis methods in common languages such as Python, R, and SQL; to using an interactive web application to create synthetic patient cohorts and to explore the wealth of available genomic data. Links to resources and documentation can be found at www.isb-cgc.org. Cancer Res; 77(21); e7–10. ©2017 AACR.

Details

ISSN :
15387445 and 00085472
Volume :
77
Database :
OpenAIRE
Journal :
Cancer Research
Accession number :
edsair.doi.dedup.....e99d034ec859484b79438a46797ec45e