Back to Search Start Over

Metal-Involving Halogen Bonding Confirmed Using DFT Calculations with Periodic Boundary Conditions

Authors :
Anastasiya A. Eliseeva
Marina A. Khazanova
Anna M. Cheranyova
Irina S. Aliyarova
Roman I. Kravchuk
Evfpraksiia S. Oganesyan
Andrey V. Ryabykh
Olga A. Maslova
Daniil M. Ivanov
Serge A. Beznosyuk
Source :
Crystals; Volume 13; Issue 5; Pages: 712
Publication Year :
2023
Publisher :
MDPI AG, 2023.

Abstract

The cocrystallization of trans-[PtI2(NCN(CH2)5)2] and iodoform (CHI3) yields crystalline adduct trans-[PtI2(NCN(CH2)5)2]∙2CHI3, the structure of which was studied via single-crystal X-ray diffractometry (XRD). In the XRD structure of trans-[PtI2(NCN(CH2)5)2]∙2CHI3, apart from rather predictable C–H∙∙∙I hydrogen bonds (HBs) and C−I∙∙∙I halogen bonds (XBs) with the iodide ligands, we identified C–I∙∙∙Pt metal-involving XBs, where the platinum center functions as an XB acceptor (that includes a metal dz2-orbital) toward the σ-holes of I atoms of CHI3. DFT calculations (PBE-D3/jorge-TZP-DKH with plane waves in the GAPW method) were carried out in the CP2K program for isolated molecules, complex–iodoform clusters, and crystal models with periodic boundary conditions, where the noncovalent nature and the existence of the interactions were confirmed using charge analysis, Wiberg bond indexes, and QTAIM topology analysis of electron density, whereas the philicities of the noncovalent partners were proved using charge analysis, electron localization function, electron density deformation, and one-electron potential projections, as well as electron density/electrostatic potential profiles for cluster models and electrostatic potential surfaces (ρ = 0.001 a.u.) for isolated molecules.

Details

ISSN :
20734352
Volume :
13
Database :
OpenAIRE
Journal :
Crystals
Accession number :
edsair.doi.dedup.....e9ec74fc2cdda5c5511e7739515f77c1
Full Text :
https://doi.org/10.3390/cryst13050712