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Anatomical Structure Segmentation in Ultrasound Volumes Using Cross Frame Belief Propagating Iterative Random Walks

Authors :
Prabal Poudel
Debarghya China
Michael Friebe
Pabitra Mitra
Debdoot Sheet
Alfredo Illanes
Source :
IEEE Journal of Biomedical and Health Informatics. 23:1110-1118
Publication Year :
2019
Publisher :
Institute of Electrical and Electronics Engineers (IEEE), 2019.

Abstract

Ultrasound (US) is widely used as a low-cost alternative to computed tomography or magnetic resonance and primarily for preliminary imaging. Since speckle intensity in US images is inherently stochastic, readers are often challenged in their ability to identify the pathological regions in a volume of a large number of images. This paper introduces a generalized approach for volumetric segmentation of structures in US images and volumes. We employ an iterative random walks (IRW) solver, a random forest learning model, and a gradient vector flow (GVF) based interframe belief propagation technique for achieving cross-frame volumetric segmentation. At the start, a weak estimate of the tissue structure is obtained using estimates of parameters of a statistical mechanics model of US tissue interaction. Ensemble learning of these parameters further using a random forest is used to initialize the segmentation pipeline. IRW is used for correcting the contour in various steps of the algorithm. Subsequently, a GVF-based interframe belief propagation is applied to adjacent frames based on the initialization of contour using information in the current frame to segment the complete volume by frame-wise processing. We have experimentally evaluated our approach using two different datasets. Intravascular ultrasound (IVUS) segmentation was evaluated using 10 pullbacks acquired at 20 MHz and thyroid US segmentation is evaluated on 16 volumes acquired at $\text{11}\text{--}\text{16}$ MHz. Our approach obtains a Jaccard score of $\text{0.937} \pm \text{0.022}$ for IVUS segmentation and $\text{0.908} \pm \text{0.028}$ for thyroid segmentation while processing each frame in $\text{1.15} \pm \text{0.05}\;\text{s}$ for the IVUS and in $\text{1.23} \pm \text{0.27}\;\text{s}$ for thyroid segmentation without the need of any computing accelerators such as GPUs.

Details

ISSN :
21682208 and 21682194
Volume :
23
Database :
OpenAIRE
Journal :
IEEE Journal of Biomedical and Health Informatics
Accession number :
edsair.doi.dedup.....eadcb2e17a07cf469a09015f646a04c8
Full Text :
https://doi.org/10.1109/jbhi.2018.2864896