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Anatomical Structure Segmentation in Ultrasound Volumes Using Cross Frame Belief Propagating Iterative Random Walks
- Source :
- IEEE Journal of Biomedical and Health Informatics. 23:1110-1118
- Publication Year :
- 2019
- Publisher :
- Institute of Electrical and Electronics Engineers (IEEE), 2019.
-
Abstract
- Ultrasound (US) is widely used as a low-cost alternative to computed tomography or magnetic resonance and primarily for preliminary imaging. Since speckle intensity in US images is inherently stochastic, readers are often challenged in their ability to identify the pathological regions in a volume of a large number of images. This paper introduces a generalized approach for volumetric segmentation of structures in US images and volumes. We employ an iterative random walks (IRW) solver, a random forest learning model, and a gradient vector flow (GVF) based interframe belief propagation technique for achieving cross-frame volumetric segmentation. At the start, a weak estimate of the tissue structure is obtained using estimates of parameters of a statistical mechanics model of US tissue interaction. Ensemble learning of these parameters further using a random forest is used to initialize the segmentation pipeline. IRW is used for correcting the contour in various steps of the algorithm. Subsequently, a GVF-based interframe belief propagation is applied to adjacent frames based on the initialization of contour using information in the current frame to segment the complete volume by frame-wise processing. We have experimentally evaluated our approach using two different datasets. Intravascular ultrasound (IVUS) segmentation was evaluated using 10 pullbacks acquired at 20 MHz and thyroid US segmentation is evaluated on 16 volumes acquired at $\text{11}\text{--}\text{16}$ MHz. Our approach obtains a Jaccard score of $\text{0.937} \pm \text{0.022}$ for IVUS segmentation and $\text{0.908} \pm \text{0.028}$ for thyroid segmentation while processing each frame in $\text{1.15} \pm \text{0.05}\;\text{s}$ for the IVUS and in $\text{1.23} \pm \text{0.27}\;\text{s}$ for thyroid segmentation without the need of any computing accelerators such as GPUs.
- Subjects :
- Thyroid Gland
Health Informatics
Belief propagation
030218 nuclear medicine & medical imaging
03 medical and health sciences
0302 clinical medicine
Health Information Management
Abdomen
Image Processing, Computer-Assisted
Humans
Segmentation
Electrical and Electronic Engineering
Ultrasonography
Mathematics
Stochastic Processes
Models, Statistical
Vector flow
Phantoms, Imaging
Image segmentation
Random walk
Ensemble learning
Computer Science Applications
Random forest
Algorithm
Algorithms
030217 neurology & neurosurgery
Intensity (heat transfer)
Subjects
Details
- ISSN :
- 21682208 and 21682194
- Volume :
- 23
- Database :
- OpenAIRE
- Journal :
- IEEE Journal of Biomedical and Health Informatics
- Accession number :
- edsair.doi.dedup.....eadcb2e17a07cf469a09015f646a04c8
- Full Text :
- https://doi.org/10.1109/jbhi.2018.2864896