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Convexity in Tree Spaces
- Source :
- SIAM Journal on Discrete Mathematics. 31:2015-2038
- Publication Year :
- 2017
- Publisher :
- Society for Industrial & Applied Mathematics (SIAM), 2017.
-
Abstract
- We study the geometry of metrics and convexity structures on the space of phylogenetic trees, which is here realized as the tropical linear space of all \ ultrametrics. The ${\rm CAT}(0)$-metric of Billera-Holmes-Vogtman arises from the theory of orthant spaces. While its geodesics can be computed by the Owen-Provan algorithm, geodesic triangles are complicated. We show that the dimension of such a triangle can be arbitrarily high. Tropical convexity and the tropical metric behave better. They exhibit properties desirable for geometric statistics, such as geodesics of small depth.<br />Comment: 21 pages, 5 figures; Theorem 13 is now proved in all dimensions
- Subjects :
- Computational Geometry (cs.CG)
FOS: Computer and information sciences
Geodesic
geodesic triangle
General Mathematics
Billera–Holmes–Vogtman metric
tropical convexity
0102 computer and information sciences
Space (mathematics)
01 natural sciences
Convexity
Combinatorics
Mathematics - Metric Geometry
FOS: Mathematics
Mathematics - Combinatorics
Mathematics::Metric Geometry
phylogenetic tree
0101 mathematics
Quantitative Biology - Populations and Evolution
Ultrametric space
Mathematics
Discrete mathematics
Linear space
010102 general mathematics
Populations and Evolution (q-bio.PE)
Metric Geometry (math.MG)
Orthant
ultrametric
CAT(0) space
010201 computation theory & mathematics
FOS: Biological sciences
polytope
Metric (mathematics)
Computer Science - Computational Geometry
Combinatorics (math.CO)
Tree (set theory)
Subjects
Details
- ISSN :
- 10957146 and 08954801
- Volume :
- 31
- Database :
- OpenAIRE
- Journal :
- SIAM Journal on Discrete Mathematics
- Accession number :
- edsair.doi.dedup.....f2645d35772bbea03d63952a07f602f2