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Structural and functional annotation of hypothetical proteins of human adenovirus: prioritizing the novel drug targets
- Source :
- BMC Research Notes, BMC Research Notes, Vol 10, Iss 1, Pp 1-6 (2017)
- Publication Year :
- 2017
-
Abstract
- Objective Human adenoviruses are small double stranded DNA viruses that provoke vast array of human diseases. Next generation sequencing techniques increase genomic data of HAdV rapidly, which increase their serotypes. The complete genome sequence of human adenovirus shows that it contains large amount of proteins with unknown cellular or biochemical function, known as hypothetical proteins. Hence, it is indispensable to functionally and structurally annotate these proteins to get better understanding of the novel drug targets. The purpose was the characterization of 38 randomly retrieved hypothetical proteins through determination of their physiochemical properties, subcellular localization, function, structure and ligand binding sites using various sequence and structure based bioinformatics tools. Results Function of six hypothetical proteins P03269, P03261, P03263, Q83127, Q1L4D7 and I6LEV1 were predicted confidently and then used further for structure analysis. We found that these proteins may act as DNA terminal protein, DNA polymerase, DNA binding protein, adenovirus E3 region protein CR1 and adenoviral protein L1. Functional and structural annotation leading to detection of binding sites by means of docking analysis can indicate potential target for therapeutics to defeat adenoviral infection. Electronic supplementary material The online version of this article (10.1186/s13104-017-2992-z) contains supplementary material, which is available to authorized users.
- Subjects :
- 0301 basic medicine
DNA polymerase
Protein Conformation
Hypothetical proteins
lcsh:Medicine
Computational biology
Plasma protein binding
medicine.disease_cause
DNA-binding protein
Antiviral Agents
General Biochemistry, Genetics and Molecular Biology
DNA sequencing
Adenoviridae
03 medical and health sciences
chemistry.chemical_compound
Viral Proteins
Protein structure
Function annotation
medicine
Humans
lcsh:Science (General)
lcsh:QH301-705.5
Whole genome sequencing
Binding Sites
030102 biochemistry & molecular biology
biology
lcsh:R
Human adenovirus
General Medicine
DNA binding protein
Research Note
030104 developmental biology
chemistry
lcsh:Biology (General)
biology.protein
DNA
lcsh:Q1-390
Protein Binding
DNA terminal protein
Subjects
Details
- ISSN :
- 17560500
- Volume :
- 10
- Issue :
- 1
- Database :
- OpenAIRE
- Journal :
- BMC research notes
- Accession number :
- edsair.doi.dedup.....f2ace1176cf97f28a436579f9a9011b8