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Target identification of a novel unsymmetrical 1,3,4‐oxadiazole derivative with antiproliferative properties
- Source :
- Journal of Cellular Physiology. 236:3789-3799
- Publication Year :
- 2020
- Publisher :
- Wiley, 2020.
-
Abstract
- 1,3,4-Oxadiazole derivatives are widely used in research on antineoplastic drugs. Recently, we discovered a novel unsymmetrical 1,3,4-oxadiazole compound with antiproliferative properties called 2j. To further investigate its possible targets and molecular mechanisms, RNA-seq was performed and the differentially expressed genes (DEGs) were obtained after treatment. Data were analyzed using functional (Gene Ontology term) and pathway (Kyoto Encyclopedia of Genes and Genomes) enrichment of the DEGs. The hub genes were determined by the analysis of protein-protein interaction networks. The connectivity map (CMap) information provided insight into the model action of antitumor small molecule drugs. Hub genes have been identified through function gene networks using STRING analysis. The small molecular targets obtained by CMap comparison showed that 2j is a tubulin inhibitor and it acts mainly affecting tumor cells through the cell cycle, FoxO signaling pathway, apoptotic, and p53 signaling pathways. The possible targets of 2j could be TUBA1A and TUBA4A. Molecular docking results indicated that 2j interacts at the colchicine-binding site on tubulin.
- Subjects :
- 0301 basic medicine
Physiology
Clinical Biochemistry
Gene regulatory network
RNA-Seq
Computational biology
03 medical and health sciences
0302 clinical medicine
Humans
Gene Regulatory Networks
Protein Interaction Maps
KEGG
Cell Proliferation
Oxadiazoles
Binding Sites
biology
Chemistry
Gene Expression Profiling
Cell Cycle
Reproducibility of Results
Cell Biology
Cell cycle
Small molecule
Molecular Docking Simulation
Gene Ontology
030104 developmental biology
Tubulin
Gene Expression Regulation
030220 oncology & carcinogenesis
biology.protein
Signal transduction
Function (biology)
HeLa Cells
Subjects
Details
- ISSN :
- 10974652 and 00219541
- Volume :
- 236
- Database :
- OpenAIRE
- Journal :
- Journal of Cellular Physiology
- Accession number :
- edsair.doi.dedup.....f329f77873a1e743e7f88a980949e646
- Full Text :
- https://doi.org/10.1002/jcp.30120