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A novel serum miRNA-pair classifier for diagnosis of sarcoma
- Source :
- PLoS ONE, Vol 15, Iss 7, p e0236097 (2020), PLoS ONE
- Publication Year :
- 2020
- Publisher :
- Public Library of Science (PLoS), 2020.
-
Abstract
- Soft tissue sarcomas (STS) is a set of rare malignant tumor originated from mesoderm. For the prognosis of sarcoma, early diagnosis is important, however, currently no mature and non-invasive method for diagnosis exists. MicroRNAs (miRNAs) are a class of noncoding RNAs and their expression varies greatly, especially during tumor activity. The purpose of this study was to construct a predictive model for the diagnosis of sarcomas based on the relative expression level of miRNA in serum. miRNA array expression data of 677 samples including 402 malignant sarcoma samples and 275 healthy samples was used to construct the prediction model. Based on 6 gene pairs, random generalized linear model (RGLM) was constructed, with an accuracy of 100% in the internal test dataset and of 74.3% in the merged external dataset in prediction whether a serum sample was obtained from a sarcoma patient, with a specificity of 100% in the internal test dataset and 90.5% in the external dataset. In conclusion, our serum miRNA-pair classifier has the potential to be used for the screening of sarcoma with high accuracy and specificity.
- Subjects :
- Male
0301 basic medicine
Oncology
Genetic Screens
Colorectal cancer
Gene Identification and Analysis
Gene regulatory network
Biochemistry
Mathematical and Statistical Techniques
0302 clinical medicine
Gene expression
Medicine and Health Sciences
Mass Screening
Gene Regulatory Networks
Data Processing
Multidisciplinary
Sarcomas
Statistics
Sarcoma
Prognosis
Nucleic acids
030220 oncology & carcinogenesis
Physical Sciences
Medicine
Female
Information Technology
Research Article
Adult
Computer and Information Sciences
medicine.medical_specialty
Science
Biology
Research and Analysis Methods
03 medical and health sciences
Diagnostic Medicine
Internal medicine
microRNA
Genetics
Cancer Detection and Diagnosis
medicine
Humans
Statistical Methods
Non-coding RNA
Gene
Mass screening
Natural antisense transcripts
Biology and life sciences
Gene Expression Profiling
Computational Biology
Cancers and Neoplasms
medicine.disease
Gene regulation
Gene expression profiling
MicroRNAs
030104 developmental biology
RNA
Mathematics
Forecasting
Subjects
Details
- ISSN :
- 19326203
- Volume :
- 15
- Database :
- OpenAIRE
- Journal :
- PLOS ONE
- Accession number :
- edsair.doi.dedup.....f3e25584e9dc433e974ead30ed79560c
- Full Text :
- https://doi.org/10.1371/journal.pone.0236097