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Draft Genome of Burkholderia cenocepacia TAtl-371, a Strain from the Burkholderia cepacia Complex Retains Antagonism in Different Carbon and Nitrogen Sources
- Source :
- Rojas-Rojas, Fernando Uriel; Sánchez-López, David; Tapia-García, Erika Yanet; Arroyo-Herrera, Ivan; Maymon, Maskit; Humm, Ethan; et al.(2019). Draft Genome of Burkholderia cenocepacia TAtl-371, a Strain from the Burkholderia cepacia Complex Retains Antagonism in Different Carbon and Nitrogen Sources.. Current microbiology. doi: 10.1007/s00284-019-01657-0. UCLA: Retrieved from: http://www.escholarship.org/uc/item/00t1012p, Current microbiology, vol 76, iss 5
- Publication Year :
- 2019
- Publisher :
- eScholarship, University of California, 2019.
-
Abstract
- Burkholderia cenocepacia TAtl-371 was isolated from the rhizosphere of a tomato plant growing in Atlatlahucan, Morelos, Mexico. This strain exhibited a broad antimicrobial spectrum against bacteria, yeast, and fungi. Here, we report and describe the improved, high-quality permanent draft genome of B. cenocepacia TAtl-371, which was sequenced using a combination of PacBio RS and PacBio RS II sequencing methods. The 7,496,106bp genome of the TAtl-371 strain is arranged in three scaffolds, contains 6722 protein-coding genes, and 99 RNA only-encoding genes. Genome analysis revealed genes related to biosynthesis of antimicrobials such as non-ribosomal peptides, siderophores, chitinases, and bacteriocins. Moreover, analysis of bacterial growth on different carbon and nitrogen sources shows that the strain retains its antimicrobial ability.
- Subjects :
- Siderophore
Burkholderia cenocepacia
Nitrogen
Siderophores
Applied Microbiology and Biotechnology
Genome
Microbiology
03 medical and health sciences
Bacteriocin
Bacteriocins
Solanum lycopersicum
Antibiosis
Genetics
Lycopersicon esculentum
Gene
Mexico
Soil Microbiology
030304 developmental biology
0303 health sciences
biology
Strain (chemistry)
030306 microbiology
Burkholderia cepacia complex
Chitinases
Bacterial
General Medicine
DNA
Sequence Analysis, DNA
biology.organism_classification
Carbon
Emerging Infectious Diseases
Medical Microbiology
Rhizosphere
Sequence Analysis
Bacteria
Genome, Bacterial
Subjects
Details
- Language :
- English
- Database :
- OpenAIRE
- Journal :
- Rojas-Rojas, Fernando Uriel; Sánchez-López, David; Tapia-García, Erika Yanet; Arroyo-Herrera, Ivan; Maymon, Maskit; Humm, Ethan; et al.(2019). Draft Genome of Burkholderia cenocepacia TAtl-371, a Strain from the Burkholderia cepacia Complex Retains Antagonism in Different Carbon and Nitrogen Sources.. Current microbiology. doi: 10.1007/s00284-019-01657-0. UCLA: Retrieved from: http://www.escholarship.org/uc/item/00t1012p, Current microbiology, vol 76, iss 5
- Accession number :
- edsair.doi.dedup.....f6339e1ca0b8c551fe3a28600d64dfe9
- Full Text :
- https://doi.org/10.1007/s00284-019-01657-0.