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Active Surveillance Program to Increase Awareness on Invasive Fungal Diseases: the French RESSIF Network (2012 to 2018)

Authors :
Bretagne, Stéphane
Sitbon, Karine
Desnos-Ollivier, Marie
Garcia-Hermoso, Dea
Letscher-Bru, Valérie
Cassaing, Sophie
Millon, Laurence
Morio, Florent
Gangneux, Jean-Pierre
Hasseine, Lilia
Favennec, Loïc
Cateau, Estelle
Bailly, Eric
Moniot, Maxime
Bonhomme, Julie
Desbois-Nogard, Nicole
Chouaki, Taieb
Paugam, André
Bouteille, Bernard
Pihet, Marc
Dalle, Frédéric
Eloy, Odile
Sasso, Milène
Demar, Magalie
Mariani-Kurkdjian, Patricia
Robert, Vincent
Lortholary, Olivier
Dromer, Françoise
French Mycoses Study Group, The
Damiani, Céline
Dupont, Hervé
Maizel, Julien
Totet, Anne
Bouchara, Jean-Philippe
Bellanger, Anne Pauline
Berceanu, Ana
Navellou, Jean Christophe
Scherer, Emeline
Abboud, Philippe
Aznar, Christine
Blanchet, Denis
Djossou, Félix
Cayot, Sophie
Garrouste, Cyril
Lesens, Olivier
Moluçon, Cécile
Nourrisson, Céline
Poirier, Philippe
Bailly, Éloïse
Basmaciyan, Louise
Belaid, Bouhemad
Blot, Mathieu
Caillot, Denis
Charles, Pierre-Emmanuel
Quenot, Jean Pierre
Amazan, Emmanuelle
Baubion, Emilie
Cabie, André
Chabartier, Cyrille
Deligny, Christophe
Emal, Violaine
Flechelle, Olivier
Hatchuel, Yves
Le Govic, Yohann
Merle, Harold
Miossec, Charline
Turmel, Jean-Marie
Valentino, Ruddy
Durieux, Marie-Fleur
Turlure, Pascal
Mercier, Victor
Gari-Toussaint, Martine
Risso, Karine
Simon, Loïc
Bretonnière, Cedric
Boutoille, David
Gastinne, Thomas
Lakhal, Karim
Launay, Elise
Lepoivre, Thierry
Peterlin, Pierre
Rialland, Fanny
Le Pape, Patrice
Canoui, Etienne
Dahane, Naima
Kerneis, Solène
Angebault, Cécile
Bougnoux, Marie-Elisabethh
Guennouni, Nadia
Lanternier, Fanny
Neven, Bennedicte
Oualha, Mehdi
Scemla, Anne
Sitterlé, Emilie
Suarez, Felipe
Toubiana, Julie
Bonacorci, Stéphane
Alanio, Alexandre
Bergeron, Anne
Denis, Blandine
Gits-Muselli, Maud
Hamane, Samia
Touratier, Sophie
Chaumeil, Christine
Merabet, Lilia
Claudéon, Joelle
Curlier, Elodie
Galantine, Valérie
Gallois, Jean Claude
Markowicz, Samuel
Nicolas, Muriel
Musson, Pascal
Schepers, Kinda
Minoza, Alida
Kauffmann-Lacroix, Catherine
Guégan, Hélène
Costa, Damien
Dehais, Marion
Gargala, Gilles
Bajolet, Odile
Banisadr, Firouze
Cousson, Joel
Himberlin, Chantal
Huguenin, Antoine
Toubas, Dominique
Flori, Pierre
Mahinc, Caroline
Raberin, Hélène
Denis, Julie
Herbrecht, Raoul
Mertes, Paul-Michel
Meziani, Fehrat
Sabou, Marcela
Schneider, Francis
Bertozzi, Anne-Isabelle
Chauvin, Pamela
Charpentier, Elena
Cointault, Olivier
Cottrel, Claire
Delavigne, Karen
Faguer, Stanislas
Fillaux, Judith
Guemas, Emilie
Iriart, Xavier
Lelièvre, Lucie
Ruiz, Jean
Bastides, Frédéric
Chesnay, Adélaïde
Desoubeaux, Guillaume
Therby, Audrey
Chachaty, Elisabeth
Gachot, Bertrand
Westerdijk Fungal Biodiversity Institute
Westerdijk Fungal Biodiversity Institute - Software and Databasing
Mycologie moléculaire - Molecular Mycology
Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité)
Hopital Saint-Louis [AP-HP] (AP-HP)
Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)
Centre National de Référence Mycoses Invasives et Antifongiques - National Reference Center Invasive Mycoses & Antifungals (CNRMA)
Institut Pasteur [Paris] (IP)-Université Paris Cité (UPCité)
Dynamique des interactions hôte pathogène (DIHP)
Université de Strasbourg (UNISTRA)
Centre Hospitalier Universitaire de Toulouse (CHU Toulouse)
Laboratoire Chrono-environnement (UMR 6249) (LCE)
Centre National de la Recherche Scientifique (CNRS)-Université de Franche-Comté (UFC)
Université Bourgogne Franche-Comté [COMUE] (UBFC)-Université Bourgogne Franche-Comté [COMUE] (UBFC)
Nantes Université (Nantes Univ)
Institut de recherche en santé, environnement et travail (Irset)
Université d'Angers (UA)-Université de Rennes (UR)-École des Hautes Études en Santé Publique [EHESP] (EHESP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Structure Fédérative de Recherche en Biologie et Santé de Rennes ( Biosit : Biologie - Santé - Innovation Technologique )
Centre Hospitalier Universitaire de Nice (CHU Nice)
CHU Rouen
Normandie Université (NU)
Centre hospitalier universitaire de Poitiers (CHU Poitiers)
Ecologie et biologie des interactions (EBI)
Université de Poitiers-Centre National de la Recherche Scientifique (CNRS)
Centre Hospitalier Régional Universitaire de Tours (CHRU Tours)
CHU Clermont-Ferrand
CHU Caen
Normandie Université (NU)-Tumorothèque de Caen Basse-Normandie (TCBN)
CHU de la Martinique [Fort de France]
CHU Amiens-Picardie
Hôpital Cochin [AP-HP]
CHU Limoges
SFR UA 4208 Interactions Cellulaires et Applications Thérapeutiques (ICAT)
Université d'Angers (UA)
Laboratoire de Parasitologie-Mycologie (CHU d'Angers)
Centre Hospitalier Universitaire d'Angers (CHU Angers)
PRES Université Nantes Angers Le Mans (UNAM)-PRES Université Nantes Angers Le Mans (UNAM)
Infections Respiratoires Fongiques (IRF)
Université d'Angers (UA)-Université de Brest (UBO)
Procédés Alimentaires et Microbiologiques [Dijon] (PAM)
Université de Bourgogne (UB)-Université Bourgogne Franche-Comté [COMUE] (UBFC)-Institut Agro Dijon
Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)
Centre Hospitalier de Versailles André Mignot (CHV)
Maladies infectieuses et vecteurs : écologie, génétique, évolution et contrôle (MIVEGEC)
Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Sud])-Université de Montpellier (UM)
Centre Hospitalier Andrée Rosemon [Cayenne, Guyane Française]
Hôpital Robert Debré Paris
Hôpital Robert Debré
Westerdijk Fungal Biodiversity Institute [Utrecht] (WI)
Royal Netherlands Academy of Arts and Sciences (KNAW)
Service des Maladies infectieuses et tropicales [CHU Necker]
CHU Necker - Enfants Malades [AP-HP]
Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)
Agents infectieux, résistance et chimiothérapie - UR UPJV 4294 (AGIR )
Université de Picardie Jules Verne (UPJV)-CHU Amiens-Picardie
Simplification des soins chez les patients complexes - UR UPJV 7518 (SSPC)
Université de Picardie Jules Verne (UPJV)
Mécanismes physiopathologiques et conséquences des calcifications vasculaires - UR UPJV 7517 (MP3CV)
Laboratoire de Parasitologie-Mycologie [CHU Angers]
Hôpital Bretonneau
Centre d’Etude des Pathologies Respiratoires (CEPR), UMR 1100 (CEPR)
Université de Tours (UT)-Institut National de la Santé et de la Recherche Médicale (INSERM)
This work was supported by recurrent financial support from Santé Publique France and Institut Pasteur. The funders had no role in study design, data collection, analysis, interpretation of data, or the decision to submit the work for publication.
We thank Didier Che (Direction des Maladies Infectieuses, Santé Publique France) for his continuous support and interest in invasive fungal infections and Etienne Sevin (EpiConcept, Paris, France) for his contribution in the development of the RESSIF website using the VOOZANOO platform. We are thankful for the technical help of Catherine Blanc, Anne Boullié, Cécile Gautier, Virginie Geolier, and Damien Hoinard (Institut Pasteur) for the characterization of the isolates received at the NRCMA.
The French Mycoses Study Group includes collaborators who contributed to these data by their involvement in the management of patients, expertise in diagnostic tools, and/or characterization of fungal isolates. They are listed in alphabetical order of a city in France and for each center, in alphabetical order of the last names: in Amiens, Céline Damiani, Hervé Dupont, Julien Maizel, and Anne Totet
in Angers, Jean-Philippe Bouchara
in Besançon, Anne Pauline Bellanger, Ana Berceanu, Jean Christophe Navellou, and Emeline Scherer
in Cayenne, Philippe Abboud, Christine Aznar, Denis Blanchet, and Félix Djossou
in Clermont-Ferrand, Sophie Cayot, Cyril Garrouste, Olivier Lesens, Cécile Moluçon, Céline Nourrisson, and Philippe Poirier
in Dijon, Éloïse Bailly, Louise Basmaciyan, Bouhemad Belaid, Mathieu Blot, Denis Caillot, Pierre-Emmanuel Charles, and Jean Pierre Quenot
in Fort de France, Emmanuelle Amazan, Emilie Baubion, André Cabie, Cyrille Chabartier, Christophe Deligny, Violaine Emal, Olivier Flechelle, Yves Hatchuel, Yohann Le Govic, Harold Merle, Charline Miossec, Jean-Marie Turmel, and Ruddy Valentino
in Limoges, Marie-Fleur Durieux and Pascal Turlure
in Nîmes, Victor Mercier
in Nice, Martine Gari-Toussaint, Karine Risso, and Loïc Simon
in Nantes, Cedric Bretonnière, David Boutoille, Thomas Gastinne, Karim Lakhal, Elise Launay, Thierry Lepoivre, Pierre Peterlin, Fanny Rialland, and Patrice Le Pape
in Paris, in Hôpital Cochin, Etienne Canoui, Naima Dahane, and Solène Kerneis
in Hôpital Necker-Enfants Malades, Cécile Angebault, Marie-Elisabethh Bougnoux, Nadia Guennouni, Fanny Lanternier, Bennedicte Neven, Mehdi Oualha, Anne Scemla, Emilie Sitterlé, Felipe Suarez, and Julie Toubiana
in Hôpital Robert-Debré, Stéphane Bonacorci
in Hôpital Saint-Louis, Alexandre Alanio, Anne Bergeron, Blandine Denis, Maud Gits-Muselli, Samia Hamane, and Sophie Touratier
in hôpital des XV-XX, Christine Chaumeil and Lilia Merabet
in Pointe-à-Pitre, Joelle Claudéon, Elodie Curlier, Valérie Galantine, Jean Claude Gallois, Samuel Markowicz, Muriel Nicolas, Pascal Musson, and Kinda Schepers
in Poitiers, Alida Minoza and Catherine Kauffmann-Lacroix
in Rennes, Hélène Guégan
in Rouen, Damien Costa, Marion Dehais, and Gilles Gargala
in Reims, Odile Bajolet, Firouze Banisadr, Joel Cousson, Chantal Himberlin, Antoine Huguenin, and Dominique Toubas
in Saint Etienne, Pierre Flori, Caroline Mahinc, and Hélène Raberin
in Strabourg, Julie Denis, Raoul Herbrecht, Paul-Michel Mertes, Fehrat Meziani, Marcela Sabou, and Francis Schneider
in Toulouse, Anne-Isabelle Bertozzi, Pamela Chauvin, Elena Charpentier, Olivier Cointault, Claire Cottrel, Karen Delavigne, Stanislas Faguer, Judith Fillaux, Emilie Guemas, Xavier Iriart, Lucie Lelièvre, and Jean Ruiz
in Tours, Frédéric Bastides, Adélaïde Chesnay, and Guillaume Desoubeaux
in Versailles, Audrey Therby
and in Villejuif, Elisabeth Chachaty and Bertrand Gachot.
CLEMENT, Nathalie
Source :
mBio, 13(3). American Society for Microbiology, mBio, mBio, 2022, pp.e0092022. ⟨10.1128/mbio.00920-22⟩
Publication Year :
2022

Abstract

International audience; The French National Reference Center for Invasive Mycoses and Antifungals leads an active and sustained nationwide surveillance program on probable and proven invasive fungal diseases (IFDs) to determine their epidemiology in France. Between 2012 and 2018, a total of 10,886 IFDs were recorded. The incidence increased slightly over time (2.16 to 2.36/10,000 hospitalization days, P = 0.0562) in relation with an increase of fungemia incidence (1.03 to 1.19/10,000, P = 0.0023), while that of other IFDs remained stable. The proportion of ≥65-year-old patients increased from 38.4% to 45.3% (P < 0.0001). Yeast fungemia (n = 5,444) was due mainly to Candida albicans (55.6%) with stable proportions of species over time. Echinocandins became the main drug prescribed (46.7% to 61.8%), but global mortality rate remained unchanged (36.3% at 1 month). Pneumocystis jirovecii pneumonia (n = 2,106) was diagnosed mostly in HIV-negative patients (80.7%) with a significantly higher mortality than in HIV-positive patients (21.9% versus 5.4% at 1 month, P < 0.0001). Invasive aspergillosis (n = 1,661) and mucormycosis (n = 314) were diagnosed mostly in hematology (>60% of the cases) with a global mortality rate of 42.5% and 59.3%, respectively, at 3 months and significant changes in diagnosis procedure over time. More concurrent infections were also diagnosed over time (from 5.4% to 9.4% for mold IFDs, P = 0.0115). In conclusion, we observed an aging of patients with IFD with a significant increase in incidence only for yeast fungemia, a trend toward more concurrent infections, which raises diagnostic and therapeutic issues. Overall, global survival associated with IFDs has not improved despite updated guidelines and new diagnostic tools.IMPORTANCE The epidemiology of invasive fungal diseases (IFDs) is hard to delineate given the difficulties in ascertaining the diagnosis that is often based on the confrontation of clinical and microbiological criteria. The present report underlines the interest of active surveillance involving mycologists and clinicians to describe the global incidence and that of the main IFDs. Globally, although the incidence of Pneumocystis pneumonia, invasive aspergillosis, and mucormycosis remained stable over the study period (2012 to 2018), that of yeast fungemia increased slightly. We also show here that IFDs seem to affect older people more frequently. The most worrisome observation is the lack of improvement in the global survival rate associated with IFDs despite the increasing use of more sensitive diagnostic tools, the availability of new antifungal drugs very active in clinical trials, and a still low/marginal rate of acquired in vitro resistance in France. Therefore, other tracks of improvement should be investigated actively.

Details

Language :
English
ISSN :
21507511 and 21612129
Database :
OpenAIRE
Journal :
mBio, 13(3). American Society for Microbiology, mBio, mBio, 2022, pp.e0092022. ⟨10.1128/mbio.00920-22⟩
Accession number :
edsair.doi.dedup.....f6e90d1e81357cffe8db5be605fa4b91