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Incremental prognostic value and underlying biological pathways of radiomics patterns in medulloblastoma
- Source :
- EBioMedicine, Vol 61, Iss, Pp 103093-(2020), EBioMedicine
- Publication Year :
- 2020
- Publisher :
- Elsevier, 2020.
-
Abstract
- Background To develop a radiomics signature for predicting overall survival (OS)/progression-free survival (PFS) in patients with medulloblastoma (MB), and to investigate the incremental prognostic value and biological pathways of the radiomics patterns. Methods A radiomics signature was constructed based on magnetic resonance imaging (MRI) from a training cohort (n = 83), and evaluated on a testing cohort (n = 83). Key pathways associated with the signature were identified by RNA-seq (GSE151519). Prognostic value of pathway genes was assessed in a public GSE85218 cohort. Findings The radiomics-clinicomolecular signature predicted OS (C-index 0.762) and PFS (C-index 0.697) better than either the radiomics signature (C-index: OS: 0.649; PFS: 0.593) or the clinicomolecular signature (C-index: OS: 0.725; PFS: 0.691) alone, with a better calibration and classification accuracy (net reclassification improvement: OS: 0.298, P = 0.022; PFS: 0.252, P = 0.026). Nine pathways were significantly correlated with the radiomics signature. Average expression value of pathway genes achieved significant risk stratification in GSE85218 cohort (log-rank P = 0.016). Interpretation This study demonstrated radiomics signature, which associated with dysregulated pathways, was an independent parameter conferring incremental value over clinicomolecular factors in survival predictions for MB patients. Funding A full list of funding bodies that contributed to this study can be found in the Acknowledgements section.
- Subjects :
- 0301 basic medicine
Oncology
MRI, Magnetic resonance imaging
GLRLM, gray-level run length matrix
NGTDM, neighborhood gray-tone difference matrix
Value (computer science)
lcsh:Medicine
T1c, Contrast-enhanced T1-weighted imaging
Kaplan-Meier Estimate
0302 clinical medicine
Radiomics
DWI, diffusion-weighted imaging
Independent parameter
Image Processing, Computer-Assisted
FLAIR, Fluid-attenuated inversion recovery
LoG, Laplacian of Gaussian
T2, T2-weighted imaging
ICC, intraclass correlation coefficient
lcsh:R5-920
CNS, Central nervous system
Disease Management
GLCM, gray-level co-occurrence matrix
General Medicine
Prognosis
Magnetic Resonance Imaging
Net reclassification improvement
030220 oncology & carcinogenesis
Cohort
lcsh:Medicine (General)
Signal Transduction
Research Paper
medicine.medical_specialty
Clinical Decision-Making
WNT, Wingless subgroup
Abbreviations: MB, Medulloblastoma
ADC, Apparent diffusion coefficient
General Biochemistry, Genetics and Molecular Biology
Biological pathway
03 medical and health sciences
Internal medicine
SHH, Sonic hedgehog subgroup
medicine
Humans
FFPE, Formalin-fixed paraffin-embedded
In patient
VOI, volume of interest
Medulloblastoma
business.industry
lcsh:R
Computational Biology
Reproducibility of Results
Molecular
medicine.disease
T1, Precontrast T1-weighted imaging
030104 developmental biology
GLDM, gray level dependence matrix
GLSZM, gray level size zone matrix
business
Biomarkers
Pathway
Subjects
Details
- Language :
- English
- ISSN :
- 23523964
- Volume :
- 61
- Database :
- OpenAIRE
- Journal :
- EBioMedicine
- Accession number :
- edsair.doi.dedup.....f76b0f234deb5d8b243a900da89520c2