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Biogenesis and structure of a Type VI secretion membrane core complex

Authors :
Abdelrahim Zoued
Annick Dujeancourt
Laureen Logger
Rémi Fronzes
Benjamin Bardiaux
Eric Cascales
Van Son Nguyen
Silvia Spinelli
Aline Desmyter
Marie-Stéphanie Aschtgen
Eric Durand
Christian Cambillau
Gérard Pehau-Arnaudet
Alain Roussel
Laboratoire d'ingénierie des systèmes macromoléculaires (LISM)
Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Aix Marseille Université (AMU)
Architecture et fonction des macromolécules biologiques (AFMB)
Centre National de la Recherche Scientifique (CNRS)-Aix Marseille Université (AMU)-Institut National de la Recherche Agronomique (INRA)
Biologie Structurale de la Sécrétion Bactérienne
Institut Pasteur [Paris]-Centre National de la Recherche Scientifique (CNRS)
Bioinformatique structurale - Structural Bioinformatics
Centre National de la Recherche Scientifique (CNRS)-Institut Pasteur [Paris]
This work was funded by Agence Nationale de la Recherche (ANR) grants ANR-10-JCJC-1303-03 to E.C., Bip:Bip to R.F., ANR-14-CE14-0006-02 to C.C. and E.C., and supported by the French Infrastructure for Integrated Structural Biology (FRISBI) ANR-10-INSB-05-01. E.D. was supported by a post-doctoral fellowship from the Fondation pour la Recherche Médicale (SPF20101221116) and ANR grants Bip:Bip and ANR-10-JCJC-1303-03. V.S.N. was supported by a PhD grant from the French Embassy in Vietnam (792803C). A.Z., L.L. and M.S.A. were recipients of doctoral fellowships from the French Ministère de la Recherche. A.Z. received a Fondation pour la Recherche Médicale fellowship (FDT20140931060).
ANR-10-JCJC-1303,A Fun T6SS,Assemblage et Fonction des Systèmes de Sécrétion de Type VI bactériens(2010)
ANR-10-INBS-0005,FRISBI,Infrastructure Française pour la Biologie Structurale Intégrée(2010)
ANR-14-CE14-0006,B-War,Guerre bactérienne: Architecture et Fonction du Système de Sécrétion de Type VI(2014)
Institut Pasteur [Paris] - Centre National de la Recherche Scientifique (CNRS)
Aix Marseille Université (AMU) - Institut National de la Santé et de la Recherche Médicale (INSERM) - Centre National de la Recherche Scientifique (CNRS)
Centre National de la Recherche Scientifique (CNRS) - Aix Marseille Université (AMU) - Institut National de la Recherche Agronomique (INRA)
Microscopie ultrastructurale - Ultrapole (CITECH)
Institut Pasteur [Paris]
Bioinformatique structurale
This work was funded by Agence Nationale de la Recherche (ANR) grants ANR-10-JCJC-1303-03 to E.C., Bip:Bip to R.F., ANR-14-CE14-0006-02 to C.C. and E.C., and supported by the French Infrastructure for Integrated Structural Biology (FRISBI) ANR-10-INSB-05-01. E.D. was supported by a post-doctoral fellowship from the Fondation pour la Recherche Médicale (SPF20101221116) and ANR grants Bip:Bip and ANR-10-JCJC-1303-03. V.S.N. was supported by a PhD grant from the French Embassy in Vietnam (792803C). A.Z., L.L. and M.S.A. were recipients of doctoral fellowships from the French Ministère de la Recherche. A.Z. received a Fondation pour la Recherche Médicale fellowship (FDT20140931060)
We thank O. Francetic for providing anti-DglA and anti-OmpF antibodies. We thank E. Marza, P. Violinova Krasteva and H. Remaut for comments on the manuscript, and T. Mignot, M. Guzzo and L. Espinosa for advice about the fluorescence microscopy experiments and the statistical analyses. We also thank the members of the R.F. and E.C. research groups for discussions and suggestions, and R. Lloubès, J. Sturgis and A. Galinier for encouragement. We thank the ERSF and Soleil Synchrotron radiation facilities for beamline allocation
ANR-10-JCJC-1303, A Fun T6SS, Assemblage et Fonction des Systèmes de Sécrétion de Type VI bactériens(2010)
ANR-14-CE14-0006, B-War, Guerre bactérienne: Architecture et Fonction du Système de Sécrétion de Type VI(2014)
ANR-10-INBS-05-01/10-INBS-0005, FRISBI, Infrastructure Française pour la Biologie Structurale Intégrée(2010)
CASCALES, ERIC
Jeunes Chercheuses et Jeunes Chercheurs - Assemblage et Fonction des Systèmes de Sécrétion de Type VI bactériens - - A Fun T6SS2010 - ANR-10-JCJC-1303 - JCJC - VALID
Infrastructure Française pour la Biologie Structurale Intégrée - - FRISBI2010 - ANR-10-INBS-0005 - INBS - VALID
Appel à projets générique - Guerre bactérienne: Architecture et Fonction du Système de Sécrétion de Type VI - - B-War2014 - ANR-14-CE14-0006 - Appel à projets générique - VALID
Aix Marseille Université (AMU)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)
Institut National de la Recherche Agronomique (INRA)-Aix Marseille Université (AMU)-Centre National de la Recherche Scientifique (CNRS)
Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS)
ANR-10-INBS-05-01/10-INBS-0005,FRISBI,Infrastructure Française pour la Biologie Structurale Intégrée(2010)
Source :
Nature, Nature, Nature Publishing Group, 2015, 523, pp.555-560. ⟨10.1038/nature14667⟩, Nature, Nature Publishing Group, 2015, 523, pp.555-560. 〈10.1038/nature14667〉, Nature, 2015, 523, pp.555-560. ⟨10.1038/nature14667⟩
Publication Year :
2015
Publisher :
HAL CCSD, 2015.

Abstract

International audience; Bacteria share their ecological niches with other microbes. The bacterial type VI secretion system is one of the key players in microbial competition, as well as being an important virulence determinant during bacterial infections. It assembles a nano-crossbow-like structure in the cytoplasm of the attacker cell that propels an arrow made of a haemolysin co-regulated protein (Hcp) tube and a valine–glycine repeat protein G (VgrG) spike and punctures the prey’s cell wall. The nano-crossbow is stably anchored to the cell envelope of the attacker by a membrane core complex. Here we show that this complex is assembled by the sequential addition of three type VI subunits (Tss)— TssJ, TssM and TssL—and present a structure of the fully assembled complex at 11.6 A ̊ resolution, determined by negative-stain electron microscopy. With overall C5 symmetry, this 1.7-megadalton complex comprises a large base in the cytoplasm. It extends in the periplasm via ten arches to form a double-ring structure containing the carboxy-terminal domain of TssM (TssMct) and TssJ that is anchored in the outer membrane. The crystal structure of the TssMct–TssJ complex coupled to whole-cell accessibility studies suggest that large conformational changes induce transient pore formation in the outer membrane, allowing passage of the attacking Hcp tube/VgrG spike.

Subjects

Subjects :
Models, Molecular
Cytoplasm
MESH : Bacterial Secretion Systems
MESH : Escherichia coli/chemistry
MESH: Escherichia coli Proteins
MESH : Cytoplasm/chemistry
[SDV.BC.BC]Life Sciences [q-bio]/Cellular Biology/Subcellular Processes [q-bio.SC]
Crystallography, X-Ray
[SDV.BBM.BM] Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular biology
MESH : Multiprotein Complexes/biosynthesis
MESH: Protein Structure, Tertiary
Bacterial secretion
MESH : Membrane Proteins/biosynthesis
MESH: Lipopeptides
MESH : Escherichia coli Proteins/chemistry
MESH: Bacterial Secretion Systems
Bacterial Secretion Systems
[SDV.BBM.BC] Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biochemistry [q-bio.BM]
MESH : Cell Membrane/chemistry
"structure of a type VI"
MESH : Membrane Proteins/chemistry
MESH : Escherichia coli Proteins/biosynthesis
0303 health sciences
[SDV.BIBS] Life Sciences [q-bio]/Quantitative Methods [q-bio.QM]
Multidisciplinary
[SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM]
MESH: Escherichia coli
Escherichia coli Proteins
MESH: Periplasm
MESH : Escherichia coli/metabolism
MESH: Protein Subunits
[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biomolecules [q-bio.BM]
[SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biomolecules [q-bio.BM]
Biochemistry
Periplasm
MESH : Cytoplasm/metabolism
MESH: Membrane Proteins
Cell envelope
Bacterial outer membrane
Porosity
MESH : Lipopeptides/biosynthesis
MESH : Protein Structure, Tertiary
MESH: Models, Molecular
[SDV.BBM.BS] Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM]
MESH : Models, Molecular
MESH : Lipopeptides/chemistry
MESH: Microscopy, Electron
Biology
MESH : Protein Subunits/biosynthesis
Lipopeptides
03 medical and health sciences
MESH: Porosity
Escherichia coli
[SDV.BC.BC] Life Sciences [q-bio]/Cellular Biology/Subcellular Processes [q-bio.SC]
Electron microscopy
Secretion
[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biochemistry [q-bio.BM]
"Biogenesis"
MESH : Cell Membrane/metabolism
"secretion membrane"
MESH : Protein Subunits/chemistry
030304 developmental biology
Type VI secretion system
X-ray crystallography
MESH : Periplasm/metabolism
MESH : Periplasm/chemistry
030306 microbiology
MESH: Cytoplasm
Cell Membrane
Membrane Proteins
[SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular biology
Periplasmic space
MESH: Multiprotein Complexes
MESH: Crystallography, X-Ray
[SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology
MESH : Microscopy, Electron
MESH : Multiprotein Complexes/chemistry
Protein Structure, Tertiary
Microscopy, Electron
Protein Subunits
Membrane protein
Multiprotein Complexes
Biophysics
[SDV.MP.BAC] Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology
MESH : Porosity
MESH : Crystallography, X-Ray
Biogenesis
MESH: Cell Membrane

Details

Language :
English
ISSN :
00280836, 14764679, and 14764687
Database :
OpenAIRE
Journal :
Nature, Nature, Nature Publishing Group, 2015, 523, pp.555-560. ⟨10.1038/nature14667⟩, Nature, Nature Publishing Group, 2015, 523, pp.555-560. 〈10.1038/nature14667〉, Nature, 2015, 523, pp.555-560. ⟨10.1038/nature14667⟩
Accession number :
edsair.doi.dedup.....f7ab5a2503cf8580b3dfee8bd10e2a3f
Full Text :
https://doi.org/10.1038/nature14667⟩