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Collaborative environmental DNA sampling from petal surfaces of flowering cherry Cerasus ×- yedoensis 'Somei-yoshino' across the Japanese archipelago

Authors :
Kazuharu Arakawa
Motomu Matsui
Shuichi Kawashima
Takeshi Kawashima
Wataru Nemoto
Momoka Tsuneyoshi
Keiichi Kanno
Akito Dobashi
Yukuto Sato
Yosuke Tanigawa
Takafumi Kataoka
Haruo Suzuki
Tazro Ohta
Kazutoshi Yoshitake
Suguru Nishijima
Satoshi Hiraoka
Yoichi Takenaka
Wataru Iwasaki
Y-h. Taguchi
Riu Yamashita
Natsuko O. Shinozaki
Tatsuhiko Hoshino
Natsuki Suganuma
Publication Year :
2017
Publisher :
Cold Spring Harbor Laboratory, 2017.

Abstract

Recent studies have shown that environmental DNA is found almost everywhere. Flower petal surfaces are an attractive tissue to use for investigation of the dispersal of environmental DNA in nature as they are isolated from the external environment until the bud opens and only then can the petal surface accumulate environmental DNA. Here, we performed a crowdsourced experiment, the “Ohanami Project”, to obtain environmental DNA samples from petal surfaces of Cerasus × yedoensis ‘Somei-yoshino’ across the Japanese archipelago during spring 2015. C. × yedoensis is the most popular garden cherry species in Japan and clones of this cultivar bloom simultaneously every spring. Data collection spanned almost every prefecture and totaled 577 DNA samples from 149 collaborators. Preliminary amplicon-sequencing analysis showed the rapid attachment of environmental DNA onto the petal surfaces. Notably, we found DNA of other common plant species in samples obtained across a wide distribution; this DNA likely originated from pollen of the Japanese cedar. Our analysis supports our belief that petal surfaces after blossoming are a promising target to reveal the dynamics of environmental DNA in nature. The success of our experiment also shows that crowdsourced environmental DNA analyses have considerable value in ecological studies.

Details

Database :
OpenAIRE
Accession number :
edsair.doi.dedup.....f99cef696dc371eaadd9867cbefd9e85
Full Text :
https://doi.org/10.1101/165522