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Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility
- Source :
- Sud, A, Thomsen, H, Law, P J, Försti, A, Filho, M I D S, Holroyd, A, Broderick, P, Orlando, G, Lenive, O, Wright, L, Cooke, R, Easton, D, Pharoah, P, Dunning, A, Peto, J, Canzian, F, Eeles, R, Kote-Jarai, ZS, Muir, K, Pashayan, N, Hoffmann, P, Nöthen, M M, Jöckel, K-H, Strandmann, E P V, Lightfoot, T, Kane, E, Roman, E, Lake, A, Montgomery, D, Jarrett, R F, Swerdlow, A J, Engert, A, Orr, N, Hemminki, K, Houlston, R S & PRACTICAL consortium 2017, ' Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility ', Nature Communications, vol. 8, no. 1, pp. 1892 . https://doi.org/10.1038/s41467-017-00320-1, Nature Communications, Vol 8, Iss 1, Pp 1-11 (2017), The PRACTICAL Consortium 2017, ' Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility ', Nature Communications, vol. 8, no. 1, 1892 . https://doi.org/10.1038/s41467-017-00320-1, Sud, A, Thomsen, H, Law, P J, Försti, A, Filho, M I D S, Holroyd, A, Broderick, P, Orlando, G, Lenive, O, Wright, L, Cooke, R, Easton, D, Pharoah, P, Dunning, A, Peto, J, Canzian, F, Eeles, R, Kote-Jarai, ZS, Muir, K, Pashayan, N, The Practical Consortium, Henderson, B E, Haiman, C A, Benlloch, S, Schumacher, F R, Olama, A A A, Berndt, S I, Conti, D V, Wiklund, F, Chanock, S, Stevens, V L, Tangen, C M, Batra, J, Clements, J, Gronberg, H, Schleutker, J, Albanes, D, Weinstein, S, Wolk, A, West, C, Mucci, L, Cancel-Tassin, G, Koutros, S, Sorensen, K D, Maehle, L, Neal, D E, Travis, R C, Hamilton, R J, Ingles, S A, Rosenstein, B & Nordestgaard, B G 2017, ' Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility ', Nature Communications, vol. 8, 1892 . https://doi.org/10.1038/s41467-017-00320-1, Sud, A, Thomsen, H, Law, P J, Försti, A, Filho, M I D S, Holroyd, A, Broderick, P, Orlando, G, Lenive, O, Wright, L, Cooke, R, Easton, D, Pharoah, P, Dunning, A, Peto, J, Canzian, F, Eeles, R, Kote-Jarai, ZS, Muir, K, Pashayan, N, Henderson, B E, Haiman, C A, Benlloch, S, Schumacher, F R, Olama, A A A, Berndt, S I, Conti, D V, Wiklund, F, Chanock, S, Stevens, V L, Tangen, C M, Batra, J, Clements, J, Gronberg, H, Schleutker, J, Albanes, D, Weinstein, S, Wolk, A, West, C, Mucci, L, Cancel-Tassin, G, Koutros, S, Sorensen, K D, Maehle, L, Neal, D E, Travis, R C, Hamilton, R J, Ingles, S A, Rosenstein, B, Lu, Y J, Giles, G G, Kibel, A S, Vega, A, Kogevinas, M, Penney, K L, Park, J Y, Stanford, J L, Cybulski, C, Nordestgaard, B G, Brenner, H, Maier, C, Kim, J, John, E M, Teixeira, M R, Neuhausen, S L, De Ruyck, K, Razack, A, Newcomb, L F, Lessel, D, Kaneva, R, Usmani, N, Claessens, F, Townsend, P A, Dominguez, M G, Roobol, M J, Menegaux, F, Hoffmann, P, Nöthen, M M, Jöckel, K H, Strandmann, E P V, Lightfoot, T, Kane, E, Roman, E, Lake, A, Montgomery, D, Jarrett, R F, Swerdlow, A J, Engert, A, Orr, N, Hemminki, K & Houlston, R S 2017, ' Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility ', Nature Communications, vol. 8, no. 1, 1892 . https://doi.org/10.1038/s41467-017-00320-1
- Publication Year :
- 2017
-
Abstract
- Several susceptibility loci for classical Hodgkin lymphoma have been reported. However, much of the heritable risk is unknown. Here, we perform a meta-analysis of two existing genome-wide association studies, a new genome-wide association study, and replication totalling 5,314 cases and 16,749 controls. We identify risk loci for all classical Hodgkin lymphoma at 6q22.33 (rs9482849, P = 1.52 × 10−8) and for nodular sclerosis Hodgkin lymphoma at 3q28 (rs4459895, P = 9.43 × 10−17), 6q23.3 (rs6928977, P = 4.62 × 10−11), 10p14 (rs3781093, P = 9.49 × 10−13), 13q34 (rs112998813, P = 4.58 × 10−8) and 16p13.13 (rs34972832, P = 2.12 × 10−8). Additionally, independent loci within the HLA region are observed for nodular sclerosis Hodgkin lymphoma (rs9269081, HLA-DPB1*03:01, Val86 in HLA-DRB1) and mixed cellularity Hodgkin lymphoma (rs1633096, rs13196329, Val86 in HLA-DRB1). The new and established risk loci localise to areas of active chromatin and show an over-representation of transcription factor binding for determinants of B-cell development and immune response.
- Subjects :
- 0301 basic medicine
DOWN-REGULATION
medicine.medical_specialty
Science
Medizin
General Physics and Astronomy
Genome-wide association study
Immunogenetics
Human leukocyte antigen
General Biochemistry, Genetics and Molecular Biology
03 medical and health sciences
immune system diseases
CAPTURE HI-C
Internal medicine
hemic and lymphatic diseases
medicine
Journal Article
EBV STATUS
Allele
lcsh:Science
REED-STERNBERG CELLS
METAANALYSIS
GENE-EXPRESSION
Genetic association
Science & Technology
Multidisciplinary
Hematology
business.industry
Cancer
MULTIPLE-SCLEROSIS
General Chemistry
medicine.disease
RISK LOCI
3. Good health
Lymphoma
Multidisciplinary Sciences
TRANSCRIPTION FACTORS
030104 developmental biology
B-CELLS
Immunology
Science & Technology - Other Topics
lcsh:Q
business
Subjects
Details
- Language :
- English
- Database :
- OpenAIRE
- Journal :
- Sud, A, Thomsen, H, Law, P J, Försti, A, Filho, M I D S, Holroyd, A, Broderick, P, Orlando, G, Lenive, O, Wright, L, Cooke, R, Easton, D, Pharoah, P, Dunning, A, Peto, J, Canzian, F, Eeles, R, Kote-Jarai, ZS, Muir, K, Pashayan, N, Hoffmann, P, Nöthen, M M, Jöckel, K-H, Strandmann, E P V, Lightfoot, T, Kane, E, Roman, E, Lake, A, Montgomery, D, Jarrett, R F, Swerdlow, A J, Engert, A, Orr, N, Hemminki, K, Houlston, R S & PRACTICAL consortium 2017, ' Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility ', Nature Communications, vol. 8, no. 1, pp. 1892 . https://doi.org/10.1038/s41467-017-00320-1, Nature Communications, Vol 8, Iss 1, Pp 1-11 (2017), The PRACTICAL Consortium 2017, ' Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility ', Nature Communications, vol. 8, no. 1, 1892 . https://doi.org/10.1038/s41467-017-00320-1, Sud, A, Thomsen, H, Law, P J, Försti, A, Filho, M I D S, Holroyd, A, Broderick, P, Orlando, G, Lenive, O, Wright, L, Cooke, R, Easton, D, Pharoah, P, Dunning, A, Peto, J, Canzian, F, Eeles, R, Kote-Jarai, ZS, Muir, K, Pashayan, N, The Practical Consortium, Henderson, B E, Haiman, C A, Benlloch, S, Schumacher, F R, Olama, A A A, Berndt, S I, Conti, D V, Wiklund, F, Chanock, S, Stevens, V L, Tangen, C M, Batra, J, Clements, J, Gronberg, H, Schleutker, J, Albanes, D, Weinstein, S, Wolk, A, West, C, Mucci, L, Cancel-Tassin, G, Koutros, S, Sorensen, K D, Maehle, L, Neal, D E, Travis, R C, Hamilton, R J, Ingles, S A, Rosenstein, B & Nordestgaard, B G 2017, ' Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility ', Nature Communications, vol. 8, 1892 . https://doi.org/10.1038/s41467-017-00320-1, Sud, A, Thomsen, H, Law, P J, Försti, A, Filho, M I D S, Holroyd, A, Broderick, P, Orlando, G, Lenive, O, Wright, L, Cooke, R, Easton, D, Pharoah, P, Dunning, A, Peto, J, Canzian, F, Eeles, R, Kote-Jarai, ZS, Muir, K, Pashayan, N, Henderson, B E, Haiman, C A, Benlloch, S, Schumacher, F R, Olama, A A A, Berndt, S I, Conti, D V, Wiklund, F, Chanock, S, Stevens, V L, Tangen, C M, Batra, J, Clements, J, Gronberg, H, Schleutker, J, Albanes, D, Weinstein, S, Wolk, A, West, C, Mucci, L, Cancel-Tassin, G, Koutros, S, Sorensen, K D, Maehle, L, Neal, D E, Travis, R C, Hamilton, R J, Ingles, S A, Rosenstein, B, Lu, Y J, Giles, G G, Kibel, A S, Vega, A, Kogevinas, M, Penney, K L, Park, J Y, Stanford, J L, Cybulski, C, Nordestgaard, B G, Brenner, H, Maier, C, Kim, J, John, E M, Teixeira, M R, Neuhausen, S L, De Ruyck, K, Razack, A, Newcomb, L F, Lessel, D, Kaneva, R, Usmani, N, Claessens, F, Townsend, P A, Dominguez, M G, Roobol, M J, Menegaux, F, Hoffmann, P, Nöthen, M M, Jöckel, K H, Strandmann, E P V, Lightfoot, T, Kane, E, Roman, E, Lake, A, Montgomery, D, Jarrett, R F, Swerdlow, A J, Engert, A, Orr, N, Hemminki, K & Houlston, R S 2017, ' Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility ', Nature Communications, vol. 8, no. 1, 1892 . https://doi.org/10.1038/s41467-017-00320-1
- Accession number :
- edsair.doi.dedup.....fbed5465037283e0ed2bcf4749e76ce1
- Full Text :
- https://doi.org/10.1038/s41467-017-00320-1