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Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility

Authors :
Sud, Amit
Thomsen, Hauke
Law, Philip J.
Försti, Asta
Filho, Miguel Inacio Da Silva
Holroyd, Amy
Broderick, Peter
Orlando, Giulia
Lenive, Oleg
Wright, Lauren
Cooke, Rosie
Easton, Douglas
Pharoah, Paul
Dunning, Alison
Peto, Julian
Canzian, Federico
Eeles, Rosalind
Kote-Jarai, ZSofia
Muir, Kenneth
Pashayan, Nora
Henderson, Brian E.
Haiman, Christopher A.
Benlloch, Sara
Schumacher, Fredrick R.
Olama, Ali Amin Al
Berndt, Sonja I.
Conti, David V.
Wiklund, Fredrik
Chanock, Stephen
Stevens, Victoria L.
Tangen, Catherine M.
Batra, Jyotsna
Clements, Judith
Gronberg, Henrik
Schleutker, Johanna
Albanes, Demetrius
Weinstein, Stephanie
Wolk, Alicja
West, Catharine
Mucci, Lorelei
Cancel-Tassin, Géraldine
Koutros, Stella
Sorensen, Karina Dalsgaard
Maehle, Lovise
Neal, David E.
Travis, Ruth C.
Hamilton, Robert J.
Ingles, Sue Ann
Rosenstein, Barry
Lu, Yong-Jie
Giles, Graham G.
Kibel, Adam S.
Vega, Ana
Kogevinas, Manolis
Penney, Kathryn L.
Park, Jong Y.
Stanford, Janet L.
Cybulski, Cezary
Nordestgaard, Børge G.
Brenner, Hermann
Maier, Christiane
Kim, Jeri
John, Esther M.
Teixeira, Manuel R.
Neuhausen, Susan L.
De Ruyck, Kim
Razack, Azad
Newcomb, Lisa F.
Lessel, Davor
Kaneva, Radka
Usmani, Nawaid
Claessens, Frank
Townsend, Paul A.
Dominguez, Manuela Gago
Roobol, Monique J.
Menegaux, Florence
Hoffmann, Per
Nöthen, Markus M.
Jöckel, Karl-Heinz
Strandmann, Elke Pogge Von
Lightfoot, Tracy
Kane, Eleanor
Roman, Eve
Lake, Annette
Montgomery, Dorothy
Jarrett, Ruth F.
Swerdlow, Anthony J.
Engert, Andreas
Orr, Nick
Hemminki, Kari
Houlston, Richard S.
Source :
Sud, A, Thomsen, H, Law, P J, Försti, A, Filho, M I D S, Holroyd, A, Broderick, P, Orlando, G, Lenive, O, Wright, L, Cooke, R, Easton, D, Pharoah, P, Dunning, A, Peto, J, Canzian, F, Eeles, R, Kote-Jarai, ZS, Muir, K, Pashayan, N, Hoffmann, P, Nöthen, M M, Jöckel, K-H, Strandmann, E P V, Lightfoot, T, Kane, E, Roman, E, Lake, A, Montgomery, D, Jarrett, R F, Swerdlow, A J, Engert, A, Orr, N, Hemminki, K, Houlston, R S & PRACTICAL consortium 2017, ' Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility ', Nature Communications, vol. 8, no. 1, pp. 1892 . https://doi.org/10.1038/s41467-017-00320-1, Nature Communications, Vol 8, Iss 1, Pp 1-11 (2017), The PRACTICAL Consortium 2017, ' Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility ', Nature Communications, vol. 8, no. 1, 1892 . https://doi.org/10.1038/s41467-017-00320-1, Sud, A, Thomsen, H, Law, P J, Försti, A, Filho, M I D S, Holroyd, A, Broderick, P, Orlando, G, Lenive, O, Wright, L, Cooke, R, Easton, D, Pharoah, P, Dunning, A, Peto, J, Canzian, F, Eeles, R, Kote-Jarai, ZS, Muir, K, Pashayan, N, The Practical Consortium, Henderson, B E, Haiman, C A, Benlloch, S, Schumacher, F R, Olama, A A A, Berndt, S I, Conti, D V, Wiklund, F, Chanock, S, Stevens, V L, Tangen, C M, Batra, J, Clements, J, Gronberg, H, Schleutker, J, Albanes, D, Weinstein, S, Wolk, A, West, C, Mucci, L, Cancel-Tassin, G, Koutros, S, Sorensen, K D, Maehle, L, Neal, D E, Travis, R C, Hamilton, R J, Ingles, S A, Rosenstein, B & Nordestgaard, B G 2017, ' Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility ', Nature Communications, vol. 8, 1892 . https://doi.org/10.1038/s41467-017-00320-1, Sud, A, Thomsen, H, Law, P J, Försti, A, Filho, M I D S, Holroyd, A, Broderick, P, Orlando, G, Lenive, O, Wright, L, Cooke, R, Easton, D, Pharoah, P, Dunning, A, Peto, J, Canzian, F, Eeles, R, Kote-Jarai, ZS, Muir, K, Pashayan, N, Henderson, B E, Haiman, C A, Benlloch, S, Schumacher, F R, Olama, A A A, Berndt, S I, Conti, D V, Wiklund, F, Chanock, S, Stevens, V L, Tangen, C M, Batra, J, Clements, J, Gronberg, H, Schleutker, J, Albanes, D, Weinstein, S, Wolk, A, West, C, Mucci, L, Cancel-Tassin, G, Koutros, S, Sorensen, K D, Maehle, L, Neal, D E, Travis, R C, Hamilton, R J, Ingles, S A, Rosenstein, B, Lu, Y J, Giles, G G, Kibel, A S, Vega, A, Kogevinas, M, Penney, K L, Park, J Y, Stanford, J L, Cybulski, C, Nordestgaard, B G, Brenner, H, Maier, C, Kim, J, John, E M, Teixeira, M R, Neuhausen, S L, De Ruyck, K, Razack, A, Newcomb, L F, Lessel, D, Kaneva, R, Usmani, N, Claessens, F, Townsend, P A, Dominguez, M G, Roobol, M J, Menegaux, F, Hoffmann, P, Nöthen, M M, Jöckel, K H, Strandmann, E P V, Lightfoot, T, Kane, E, Roman, E, Lake, A, Montgomery, D, Jarrett, R F, Swerdlow, A J, Engert, A, Orr, N, Hemminki, K & Houlston, R S 2017, ' Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility ', Nature Communications, vol. 8, no. 1, 1892 . https://doi.org/10.1038/s41467-017-00320-1
Publication Year :
2017

Abstract

Several susceptibility loci for classical Hodgkin lymphoma have been reported. However, much of the heritable risk is unknown. Here, we perform a meta-analysis of two existing genome-wide association studies, a new genome-wide association study, and replication totalling 5,314 cases and 16,749 controls. We identify risk loci for all classical Hodgkin lymphoma at 6q22.33 (rs9482849, P = 1.52 × 10−8) and for nodular sclerosis Hodgkin lymphoma at 3q28 (rs4459895, P = 9.43 × 10−17), 6q23.3 (rs6928977, P = 4.62 × 10−11), 10p14 (rs3781093, P = 9.49 × 10−13), 13q34 (rs112998813, P = 4.58 × 10−8) and 16p13.13 (rs34972832, P = 2.12 × 10−8). Additionally, independent loci within the HLA region are observed for nodular sclerosis Hodgkin lymphoma (rs9269081, HLA-DPB1*03:01, Val86 in HLA-DRB1) and mixed cellularity Hodgkin lymphoma (rs1633096, rs13196329, Val86 in HLA-DRB1). The new and established risk loci localise to areas of active chromatin and show an over-representation of transcription factor binding for determinants of B-cell development and immune response.

Details

Language :
English
Database :
OpenAIRE
Journal :
Sud, A, Thomsen, H, Law, P J, Försti, A, Filho, M I D S, Holroyd, A, Broderick, P, Orlando, G, Lenive, O, Wright, L, Cooke, R, Easton, D, Pharoah, P, Dunning, A, Peto, J, Canzian, F, Eeles, R, Kote-Jarai, ZS, Muir, K, Pashayan, N, Hoffmann, P, Nöthen, M M, Jöckel, K-H, Strandmann, E P V, Lightfoot, T, Kane, E, Roman, E, Lake, A, Montgomery, D, Jarrett, R F, Swerdlow, A J, Engert, A, Orr, N, Hemminki, K, Houlston, R S & PRACTICAL consortium 2017, ' Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility ', Nature Communications, vol. 8, no. 1, pp. 1892 . https://doi.org/10.1038/s41467-017-00320-1, Nature Communications, Vol 8, Iss 1, Pp 1-11 (2017), The PRACTICAL Consortium 2017, ' Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility ', Nature Communications, vol. 8, no. 1, 1892 . https://doi.org/10.1038/s41467-017-00320-1, Sud, A, Thomsen, H, Law, P J, Försti, A, Filho, M I D S, Holroyd, A, Broderick, P, Orlando, G, Lenive, O, Wright, L, Cooke, R, Easton, D, Pharoah, P, Dunning, A, Peto, J, Canzian, F, Eeles, R, Kote-Jarai, ZS, Muir, K, Pashayan, N, The Practical Consortium, Henderson, B E, Haiman, C A, Benlloch, S, Schumacher, F R, Olama, A A A, Berndt, S I, Conti, D V, Wiklund, F, Chanock, S, Stevens, V L, Tangen, C M, Batra, J, Clements, J, Gronberg, H, Schleutker, J, Albanes, D, Weinstein, S, Wolk, A, West, C, Mucci, L, Cancel-Tassin, G, Koutros, S, Sorensen, K D, Maehle, L, Neal, D E, Travis, R C, Hamilton, R J, Ingles, S A, Rosenstein, B & Nordestgaard, B G 2017, ' Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility ', Nature Communications, vol. 8, 1892 . https://doi.org/10.1038/s41467-017-00320-1, Sud, A, Thomsen, H, Law, P J, Försti, A, Filho, M I D S, Holroyd, A, Broderick, P, Orlando, G, Lenive, O, Wright, L, Cooke, R, Easton, D, Pharoah, P, Dunning, A, Peto, J, Canzian, F, Eeles, R, Kote-Jarai, ZS, Muir, K, Pashayan, N, Henderson, B E, Haiman, C A, Benlloch, S, Schumacher, F R, Olama, A A A, Berndt, S I, Conti, D V, Wiklund, F, Chanock, S, Stevens, V L, Tangen, C M, Batra, J, Clements, J, Gronberg, H, Schleutker, J, Albanes, D, Weinstein, S, Wolk, A, West, C, Mucci, L, Cancel-Tassin, G, Koutros, S, Sorensen, K D, Maehle, L, Neal, D E, Travis, R C, Hamilton, R J, Ingles, S A, Rosenstein, B, Lu, Y J, Giles, G G, Kibel, A S, Vega, A, Kogevinas, M, Penney, K L, Park, J Y, Stanford, J L, Cybulski, C, Nordestgaard, B G, Brenner, H, Maier, C, Kim, J, John, E M, Teixeira, M R, Neuhausen, S L, De Ruyck, K, Razack, A, Newcomb, L F, Lessel, D, Kaneva, R, Usmani, N, Claessens, F, Townsend, P A, Dominguez, M G, Roobol, M J, Menegaux, F, Hoffmann, P, Nöthen, M M, Jöckel, K H, Strandmann, E P V, Lightfoot, T, Kane, E, Roman, E, Lake, A, Montgomery, D, Jarrett, R F, Swerdlow, A J, Engert, A, Orr, N, Hemminki, K & Houlston, R S 2017, ' Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility ', Nature Communications, vol. 8, no. 1, 1892 . https://doi.org/10.1038/s41467-017-00320-1
Accession number :
edsair.doi.dedup.....fbed5465037283e0ed2bcf4749e76ce1
Full Text :
https://doi.org/10.1038/s41467-017-00320-1