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A local fingerprint for hydrophobicity and hydrophilicity: From methane to peptides
- Source :
- idUS. Depósito de Investigación de la Universidad de Sevilla, instname, idUS: Depósito de Investigación de la Universidad de Sevilla, Universidad de Sevilla (US), The Journal of Chemical Physics
- Publication Year :
- 2019
- Publisher :
- AIP Publishing, 2019.
-
Abstract
- An important characteristic that determines the behavior of a solute in water is whether it is hydrophobic or hydrophilic. The traditional classification is based on chemical experience and heuristics. However, this does not reveal how the local environment modulates this important property. We present a local fingerprint for hydrophobicity and hydrophilicity inspired by the two body contribution to the entropy. This fingerprint is an inexpensive, quantitative, and physically meaningful way of studying hydrophilicity and hydrophobicity that only requires as input the water-solute radial distribution functions. We apply our fingerprint to octanol, benzene, and 20 proteinogenic amino acids. Our measure of hydrophilicity is coherent with chemical experience, and moreover, it also shows how the character of an atom can change as its environment is changed. Finally, we use the fingerprint as a collective variable in a funnel metadynamics simulation of a host-guest system. The fingerprint serves as a desolvation collective variable that enhances transitions between the bound and unbound states. España Ministerio de Educacion Cultura y Deporte Grant (No. FPU14/02100)
- Subjects :
- Octanol
Models, Molecular
Protein Conformation
General Physics and Astronomy
FOS: Physical sciences
010402 general chemistry
01 natural sciences
Methane
chemistry.chemical_compound
Physics - Chemical Physics
0103 physical sciences
Desolvation
Physical and Theoretical Chemistry
Chemical Physics (physics.chem-ph)
010304 chemical physics
Metadynamics
Hydrogen Bonding
Radial distribution
0104 chemical sciences
chemistry
Chemical physics
Local environment
Thermodynamics
Peptides
Hydrophobic and Hydrophilic Interactions
Subjects
Details
- Database :
- OpenAIRE
- Journal :
- idUS. Depósito de Investigación de la Universidad de Sevilla, instname, idUS: Depósito de Investigación de la Universidad de Sevilla, Universidad de Sevilla (US), The Journal of Chemical Physics
- Accession number :
- edsair.doi.dedup.....fd31f87cbd6becca5644ffbeee075864