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The Quest for Orthologs orthology benchmark service in 2022

Authors :
Yannis, Nevers
Tamsin E M, Jones
Dushyanth, Jyothi
Bethan, Yates
Meritxell, Ferret
Laura, Portell-Silva
Laia, Codo
Salvatore, Cosentino
Marina, Marcet-Houben
Anna, Vlasova
Laetitia, Poidevin
Arnaud, Kress
Mark, Hickman
Emma, Persson
Ivana, Piližota
Cristina, Guijarro-Clarke
Wataru, Iwasaki
Odile, Lecompte
Erik, Sonnhammer
David S, Roos
Toni, Gabaldón
David, Thybert
Paul D, Thomas
Yanhui, Hu
David M, Emms
Elspeth, Bruford
Salvador, Capella-Gutierrez
Maria J, Martin
Christophe, Dessimoz
Vicky, Sundesha
Source :
Nucleic acids research.
Publication Year :
2022

Abstract

The Orthology Benchmark Service (https://orthology.benchmarkservice.org) is the gold standard for orthology inference evaluation, supported and maintained by the Quest for Orthologs consortium. It is an essential resource to compare existing and new methods of orthology inference (the bedrock for many comparative genomics and phylogenetic analysis) over a standard dataset and through common procedures. The Quest for Orthologs Consortium is dedicated to maintaining the resource up to date, through regular updates of the Reference Proteomes and increasingly accessible data through the OpenEBench platform. For this update, we have added a new benchmark based on curated orthology assertion from the Vertebrate Gene Nomenclature Committee, and provided an example meta-analysis of the public predictions present on the platform.

Details

ISSN :
13624962
Database :
OpenAIRE
Journal :
Nucleic acids research
Accession number :
edsair.pmid..........0d8a1ea99800c5f44f00413ebb9fffde