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Complete genome sequence of the Sulfodiicoccus acidiphilus strain HS-1
- Source :
- BMC Research Notes
- Publication Year :
- 2019
-
Abstract
- Objective Sulfodiicoccus acidiphilus HS-1T is the type species of the genus Sulfodiicoccus, a thermoacidophilic archaeon belonging to the order Sulfolobales (class Thermoprotei; phylum Crenarchaeota). While S. acidiphilus HS-1T shares many common physiological and phenotypic features with other Sulfolobales species, the similarities in their 16S rRNA gene sequences are less than 89%. In order to know the genomic features of S. acidiphilus HS-1T in the order Sulfolobales, we determined and characterized the genome of this strain. Results The circular genome of S. acidiphilus HS-1T is comprised of 2353,189 bp with a G+C content of 51.15 mol%. A total of 2459 genes were predicted, including 2411 protein coding and 48 RNA genes. The notable genomic features of S. acidiphilus HS-1T in Sulfolobales species are the absence of genes for polB3 and the autotrophic carbon fixation pathway, and the distribution pattern of essential genes and sequences related to genomic replication initiation. These insights contribute to an understanding of archaeal genomic diversity and evolution. Electronic supplementary material The online version of this article (10.1186/s13104-019-4488-5) contains supplementary material, which is available to authorized users.
- Subjects :
- Sulfodiicoccus
Base Composition
Whole Genome Sequencing
Archaeal Proteins
Crenarchaeota
Genomics
Hot Springs
Genes, Archaeal
Research Note
DNA, Archaeal
Japan
Species Specificity
Genome, Archaeal
RNA, Ribosomal, 16S
Sulfolobaceae
Gene Order
Dicarboxylate/4-hydroxybutyrate
polB3
3-Hydroxypropionate/4-hydroxybutyrate
cdc6
Phylogeny
Sulfolobales
Subjects
Details
- ISSN :
- 17560500
- Volume :
- 12
- Issue :
- 1
- Database :
- OpenAIRE
- Journal :
- BMC research notes
- Accession number :
- edsair.pmid..........b7c89ab5c9e27f6fc9f9daedf6584bf2