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The GenTree Platform: growth traits and tree-level environmental data in 12 European forest tree species

Authors :
Opgenoorth, Lars
Dauphin, Benjamin
Benavides, Raquel
Heer, Katrin
Alizoti, Paraskevi
Martínez-Sancho, Elisabet
Alía, Ricardo
Ambrosio, Olivier
Audrey, Albet
Auñón, Francisco
Avanzi, Camilla
Avramidou, Evangelia
Bagnoli, Francesca
Barbas, Evangelos
Bastias, Cristina C
Bastien, Catherine
Ballesteros, Eduardo
Beffa, Giorgia
Bernier, Frédéric
Bignalet, Henri
Bodineau, Guillaume
Bouic, Damien
Brodbeck, Sabine
Brunetto, William
Buchovska, Jurata
Buy, Melanie
Cabanillas-Saldaña, Ana M
Carvalho, Bárbara
Cheval, Nicolas
Climent, José M
Correard, Marianne
Cremer, Eva
Danusevičius, Darius
Del Caño, Fernando
Denou, Jean-Luc
Di Gerardi, Nicolas
Dokhelar, Bernard
Ducousso, Alexis
Nilsen, Anne Eskild
Farsakoglou, Anna-Maria
Fonti, Patrick
Ganopoulos, Ioannis
García Del Barrio, José M
Gilg, Olivier
González-Martínez, Santiago C
Graf, René
Gray, Alan
Grivet, Delphine
Gugerli, Felix
Hartleitner, Christoph
Hollenbach, Enja
Hurel, Agathe
Issehut, Bernard
Jean, Florence
Jorge, Veronique
Jouineau, Arnaud
Kappner, Jan-Philipp
Kärkkäinen, Katri
Kesälahti, Robert
Knutzen, Florian
Kujala, Sonja T
Kumpula, Timo A
Labriola, Mariaceleste
Lalanne, Celine
Lambertz, Johannes
Lascoux, Martin
Lejeune, Vincent
Le-Provost, Gregoire
Levillain, Joseph
Liesebach, Mirko
López-Quiroga, David
Meier, Benjamin
Malliarou, Ermioni
Marchon, Jérémy
Mariotte, Nicolas
Mas, Antonio
Matesanz, Silvia
Meischner, Helge
Michotey, Célia
Milesi, Pascal
Morganti, Sandro
Nievergelt, Daniel
Notivol, Eduardo
Østreng, Geir
Pakull, Birte
Perry, Annika
Piotti, Andrea
Plomion, Christophe
Poinot, Nicolas
Pringarbe, Mehdi
Puzos, Luc
Pyhäjärvi, Tanja
Raffin, Annie
Ramírez-Valiente, José A
Rellstab, Christian
Remi, Dourthe
Richter, Sebastian
Robledo-Arnuncio, Juan J
San Segundo, Sergio
Savolainen, Outi
Schueler, Silvio
Schneck, Volker
Scotti, Ivan
Semerikov, Vladimir
Slámová, Lenka
Sønstebø, Jørn Henrik
Spanu, Ilaria
Thevenet, Jean
Tollefsrud, Mari Mette
Turion, Norbert
Vendramin, Giovanni Giuseppe
Villar, Marc
von Arx, Georg
Westin, Johan
Fady, Bruno
Myking, Tor
Valladares, Fernando
Aravanopoulos, Filippos A
Cavers, Stephen
Swiss Federal Institute for Forest, Snow and Landscape Research WSL
Philipps Universität Marburg = Philipps University of Marburg
Department of Biogeography and Global Change
Museo Nacional de Ciencias Naturales [Madrid] (MNCN)
Consejo Superior de Investigaciones Científicas [Madrid] (CSIC)-Consejo Superior de Investigaciones Científicas [Madrid] (CSIC)
Aristotle University of Thessaloniki
Department of Forest Ecology and Genetics
Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria = National Institute for Agricultural and Food Research and Technology (INIA)
Ecologie des Forêts Méditerranéennes (URFM)
Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
Unité expérimentale Forêt Pierroton (UEFP)
Istituto di Bioscienze e BioRisorse [Palermo] (IBBR)
National Research Council of Italy | Consiglio Nazionale delle Ricerche (CNR)
Centre d’Ecologie Fonctionnelle et Evolutive (CEFE)
Université Paul-Valéry - Montpellier 3 (UPVM)-École Pratique des Hautes Études (EPHE)
Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Sud])-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut Agro - Montpellier SupAgro
Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)
Biologie intégrée pour la valorisation de la diversité des Arbres et de la Forêt (BioForA)
Office national des forêts (ONF)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
Génétique et Biomasse Forestières ORléans (GBFOR)
Vytautas Magnus University - Vytauto Didziojo Universitetas (VDU)
Unité de Recherche Génomique Info (URGI)
Gobierno de Aragon
Centro de Investigación y Tecnología Agroalimentaria de Aragón (CITA)
Unité Expérimentale Entomologie et Forêt Méditerranéenne (UEFM)
Bavarian Office for Forest Seeding and Planting
Partenaires INRAE
Biodiversité, Gènes & Communautés (BioGeCo)
Université de Bordeaux (UB)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
Norsk institutt for bioøkonomi=Norwegian Institute of Bioeconomy Research (NIBIO)
UK Centre for Ecology & Hydrology
Natural Environment Research Council (NERC)
LIECO GmbH & Co KG
Natural Resources Institute Finland (LUKE)
University of Oulu
Department of Ecology and Genetics [Uppsala] (EBC)
Uppsala University
SILVA (SILVA)
AgroParisTech-Université de Lorraine (UL)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
Thunen Institute of Forest Ecosystems
Thünen Institute
Área de Biodiversidad y Conservación, Universidad Rey Juan Carlos
Universidad Rey Juan Carlos [Madrid] (URJC)
Austrian Research Centre for Forests (BFW)
Institute of Plant and Animal Ecology
Ural Branch of Russian Academy of Sciences (UB RAS)
Skogforsk - Swedish Forestry Research Institute
Swiss Secretariat for Education, Research and Innovation (SERI) 6.0032
European Project: 676876,H2020,H2020-SFS-2015-2,GenTree(2016)
Philipps Universität Marburg
Museo Nacional de Ciencias Naturales (CSIC)
Consiglio Nazionale delle Ricerche (CNR)
Université Paul-Valéry - Montpellier 3 (UPVM)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-École pratique des hautes études (EPHE)
Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Sud])-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro)
Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
Office National des Forêts (ONF)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
Centro de Investigacion Y Tecnologia Agroalimentaria de Aragon
Norwegian Institute of Bioeconomy Research (NIBIO)
Centro de Investigacion y Tecnologia Agroalimentaria de Aragon (CITA)
Source :
GigaScience, GigaScience, 2021, 10 (3), pp.giab010. ⟨10.1093/gigascience/giab010⟩, GigaScience, BioMed Central, 2021, 10 (3), pp.giab010. ⟨10.1093/gigascience/giab010⟩, giab010
Publication Year :
2021
Publisher :
BioMed Central, 2021.

Abstract

Background: Progress in the field of evolutionary forest ecology has been hampered by the huge challenge of phenotyping trees across their ranges in their natural environments, and the limitation in high-resolution environmental information. Findings: The GenTree Platform contains phenotypic and environmental data from 4,959 trees from 12 ecologically and economically important European forest tree species: Abies alba Mill. (silver fir), Betula pendula Roth. (silver birch), Fagus sylvatica L. (European beech), Picea abies (L.) H. Karst (Norway spruce), Pinus cembra L. (Swiss stone pine), Pinus halepensis Mill. (Aleppo pine), Pinus nigra Arnold (European black pine), Pinus pinaster Aiton (maritime pine), Pinus sylvestris L. (Scots pine), Populus nigra L. (European black poplar), Taxus baccata L. (English yew), and Quercus petraea (Matt.) Liebl. (sessile oak). Phenotypic (height, diameter at breast height, crown size, bark thickness, biomass, straightness, forking, branch angle, fructification), regeneration, environmental in situ measurements (soil depth, vegetation cover, competition indices), and environmental modeling data extracted by using bilinear interpolation accounting for surrounding conditions of each tree (precipitation, temperature, insolation, drought indices) were obtained from trees in 194 sites covering the species’ geographic ranges and reflecting local environmental gradients. Conclusion: The GenTree Platform is a new resource for investigating ecological and evolutionary processes in forest trees. The coherent phenotyping and environmental characterization across 12 species in their European ranges allow for a wide range of analyses from forest ecologists, conservationists, and macro-ecologists. Also, the data here presented can be linked to the GenTree Dendroecological collection, the GenTree Leaf Trait collection, and the GenTree Genomic collection presented elsewhere, which together build the largest evolutionary forest ecology data collection available.

Details

Language :
English
ISSN :
2047217X
Database :
OpenAIRE
Journal :
GigaScience, GigaScience, 2021, 10 (3), pp.giab010. ⟨10.1093/gigascience/giab010⟩, GigaScience, BioMed Central, 2021, 10 (3), pp.giab010. ⟨10.1093/gigascience/giab010⟩, giab010
Accession number :
edsair.pmid.dedup....352da746420b08d24f0f6e56a980abf5
Full Text :
https://doi.org/10.1093/gigascience/giab010⟩