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Viral Host Range database, an online tool for recording, analyzing and disseminating virus-host interactions

Authors :
Lamy-Besnier, Quentin
Brancotte, Bryan
Ménager, Hervé
Debarbieux, Laurent
Bactériophage, bactérie, hôte - Bacteriophage, bacterium, host
Institut Pasteur [Paris] (IP)
Université Paris Cité (UPCité)
Hub Bioinformatique et Biostatistique - Bioinformatics and Biostatistics HUB
Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS)
This work has been supported by grant ANR-19-AMRB-0002
ANR-19-AMRB-0002,MAPVAP,Évaluation préclinique et mécanistique de deux cocktails de bactériophages ciblant Pseudomonas aeruginosa et Escherichia coli multirésistants pour le traitement des pneumonies acquises sous ventilation(2019)
Institut Pasteur [Paris]
Université de Paris (UP)
Institut Pasteur [Paris]-Centre National de la Recherche Scientifique (CNRS)
Source :
Bioinformatics, Bioinformatics, 2021, 60 (4), pp.921-925. ⟨10.1093/bioinformatics/btab070⟩, Bioinformatics, Oxford University Press (OUP), 2021, 60 (4), pp.921-925. ⟨10.1093/bioinformatics/btab070⟩
Publication Year :
2020

Abstract

Abstrtact Motivation Viruses are ubiquitous in the living world, and their ability to infect more than one host defines their host range. However, information about which virus infects which host, and about which host is infected by which virus, is not readily available. Results We developed a web-based tool called the Viral Host Range database to record, analyze and disseminate experimental host range data for viruses infecting archaea, bacteria and eukaryotes. Availability and implementation The ViralHostRangeDB application is available from https://viralhostrangedb.pasteur.cloud. Its source code is freely available from the Gitlab instance of Institut Pasteur (https://gitlab.pasteur.fr/hub/viralhostrangedb).

Details

ISSN :
13674811 and 13674803
Database :
OpenAIRE
Journal :
Bioinformatics (Oxford, England)
Accession number :
edsair.pmid.dedup....b69ab81d4de2b9096b0c0f75203b1235
Full Text :
https://doi.org/10.1093/bioinformatics/btab070⟩