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A systematic study of the valence electronic structure of cyclo(Gly-Phe), cyclo(Trp-Tyr) and cyclo(Trp-Trp) dipeptides in the gas phase
- Source :
- PCCP. Physical chemistry chemical physics, 23 (2021): 26793–26805. doi:10.1039/d1cp04050b, info:cnr-pdr/source/autori:Molteni E.; Mattioli G.; Alippi P.; Avaldi L.; Bolognesi P.; Carlini L.; Vismarra F.; Wu Y.; Varillas R.B.; Nisoli M.; Singh M.; Valadan M.; Altucci C.; Richter R.; Sangalli D./titolo:A systematic study of the valence electronic structure of cyclo(Gly-Phe), cyclo(Trp-Tyr) and cyclo(Trp-Trp) dipeptides in the gas phase/doi:10.1039%2Fd1cp04050b/rivista:PCCP. Physical chemistry chemical physics (Print)/anno:2021/pagina_da:26793/pagina_a:26805/intervallo_pagine:26793–26805/volume:23
- Publication Year :
- 2021
-
Abstract
- The electronic energy levels of cyclo(glycine-phenylalanine), cyclo(tryptophan-tyrosine) and cyclo(tryptophan-tryptophan) dipeptides are investigated with a joint experimental and theoretical approach. Experimentally, valence photoelectron spectra in the gas phase are measured using VUV radiation. Theoretically, we first obtain low-energy conformers through an automated conformer-rotamer ensemble sampling scheme based on tight-binding simulations. Then, different first principles computational schemes are considered to simulate the spectra: Hartree-Fock (HF), density functional theory (DFT) within the B3LYP approximation, the quasi-particle GW correction, and the quantum-chemistry CCSD method. Theory allows assignment of the main features of the spectra. A discussion on the role of electronic correlation is provided, by comparing computationally cheaper DFT scheme (and GW) results with the accurate CCSD method.
- Subjects :
- Quantitative Biology::Biomolecules
gas-phase
photoemission spectroscopy
ab initio
Phenylalanine
Tryptophan
EOM-CCSD
Electrons
Dipeptides
DFT
Peptides, Cyclic
tight binding
MBPT
Physics::Atomic and Molecular Clusters
Gases
Physics::Chemical Physics
dipeptide
Oligopeptides
atomistic simulation
Density Functional Theory
Subjects
Details
- ISSN :
- 14639084
- Volume :
- 23
- Issue :
- 47
- Database :
- OpenAIRE
- Journal :
- Physical chemistry chemical physics : PCCP
- Accession number :
- edsair.pmid.dedup....cf8d9c4af81eecf4e6d5f4c63b2efd93
- Full Text :
- https://doi.org/10.1039/d1cp04050b