Back to Search
Start Over
An $O(n^2)$ Algorithm for Computing Longest Common Cyclic Subsequence
- Publication Year :
- 2009
-
Abstract
- The {\em longest common subsequence (LCS)} problem is a classic and well-studied problem in computer science. LCS is a central problem in stringology and finds broad applications in text compression, error-detecting codes and biological sequence comparison. However, in numerous contexts, words represent cyclic sequences of symbols and LCS must be generalized to consider all circular shifts of the strings. This occurs especially in computational biology when genetic material is sequenced form circular DNA or RNA molecules. This initiates the problem of {\em longest common cyclic subsequence (LCCS)} which finds the longest subsequence between all circular shifts of two strings. In this paper, we give an $O(n^2)$ algorithm for solving LCCS problem where $n$ is the number of symbols in the strings.<br />Comment: This paper has been withdrawn by the author due to a crucial error in the proofs
- Subjects :
- Computer Science - Data Structures and Algorithms
Subjects
Details
- Database :
- arXiv
- Publication Type :
- Report
- Accession number :
- edsarx.0911.5031
- Document Type :
- Working Paper