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Boolean constraint satisfaction problems for reaction networks

Authors :
Seganti, Alessandro
De Martino, Andrea
Ricci-Tersenghi, Federico
Source :
J. Stat. Mech. (2013) P09009
Publication Year :
2013

Abstract

We define and study a class of (random) Boolean constraint satisfaction problems representing minimal feasibility constraints for networks of chemical reactions. The constraints we consider encode, respectively, for hard mass-balance conditions (where the consumption and production fluxes of each chemical species are matched) and for soft mass-balance conditions (where a net production of compounds is in principle allowed). We solve these constraint satisfaction problems under the Bethe approximation and derive the corresponding Belief Propagation equations, that involve 8 different messages. The statistical properties of ensembles of random problems are studied via the population dynamics methods. By varying a chemical potential attached to the activity of reactions, we find first order transitions and strong hysteresis, suggesting a non-trivial structure in the space of feasible solutions.<br />Comment: 16 pages (incl. appendix)

Details

Database :
arXiv
Journal :
J. Stat. Mech. (2013) P09009
Publication Type :
Report
Accession number :
edsarx.1306.2480
Document Type :
Working Paper
Full Text :
https://doi.org/10.1088/1742-5468/2013/09/P09009