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ReconMap: An interactive visualisation of human metabolism
- Publication Year :
- 2016
-
Abstract
- A genome-scale reconstruction of human metabolism, Recon 2, is available but no interface exists to interactively visualise its content integrated with omics data and simulation results. We manually drew a comprehensive map, ReconMap 2.0, that is consistent with the content of Recon 2. We present it within a web interface that allows content query, visualization of custom datasets and submission of feedback to manual curators. ReconMap can be accessed via http://vmh.uni.lu, with network export in a Systems Biology Graphical Notation compliant format. A Constraint-Based Reconstruction and Analysis (COBRA) Toolbox extension to interact with ReconMap is available via https://github.com/opencobra/cobratoolbox.<br />Comment: 3 pages, 1 figure, submitted
Details
- Database :
- arXiv
- Publication Type :
- Report
- Accession number :
- edsarx.1606.00042
- Document Type :
- Working Paper