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An efficient MPI/OpenMP parallelization of the Hartree-Fock method for the second generation of Intel Xeon Phi processor

Authors :
Mironov, Vladimir
Alexeev, Yuri
Keipert, Kristopher
D'mello, Michael
Moskovsky, Alexander
Gordon, Mark S.
Publication Year :
2017

Abstract

Modern OpenMP threading techniques are used to convert the MPI-only Hartree-Fock code in the GAMESS program to a hybrid MPI/OpenMP algorithm. Two separate implementations that differ by the sharing or replication of key data structures among threads are considered, density and Fock matrices. All implementations are benchmarked on a super-computer of 3,000 Intel Xeon Phi processors. With 64 cores per processor, scaling numbers are reported on up to 192,000 cores. The hybrid MPI/OpenMP implementation reduces the memory footprint by approximately 200 times compared to the legacy code. The MPI/OpenMP code was shown to run up to six times faster than the original for a range of molecular system sizes.<br />Comment: SC17 conference paper, 12 pages, 7 figures

Details

Database :
arXiv
Publication Type :
Report
Accession number :
edsarx.1708.00033
Document Type :
Working Paper
Full Text :
https://doi.org/10.1145/3126908.3126956