BioNet: Infusing Biomarker Prior into Global-to-Local Network for Choroid Segmentation in Optical Coherence Tomography Images

Choroid is the vascular layer of the eye, which is directly related to the incidence and severity of many ocular diseases. Optical Coherence Tomography (OCT) is capable of imaging both the cross-sectional view of retina and choroid, but the segmentation of the choroid region is challenging because of the fuzzy choroid-sclera interface (CSI). In this paper, we propose a biomarker infused global-to-local network (BioNet) for choroid segmentation, which segments the choroid with higher credibility and robustness. Firstly, our method trains a biomarker prediction network to learn the features of the biomarker. Then a global multi-layers segmentation module is applied to segment the OCT image into 12 layers. Finally, the global multi-layered result and the original OCT image are fed into a local choroid segmentation module to segment the choroid region with the biomarker infused as regularizer. We conducted comparison experiments with the state-of-the-art methods on a dataset (named AROD). The experimental results demonstrate the superiority of our method with $90.77\%$ Dice-index and 6.23 pixels Average-unsigned-surface-detection-error, etc.
Comment: This paper has been cast for ISBI 2020