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Genome sequence of the model plant pathogen Pectobacterium carotovorum SCC1

Authors :
Outi Niemi
Pia Laine
Patrik Koskinen
Miia Pasanen
Ville Pennanen
Heidi Harjunpää
Johanna Nykyri
Liisa Holm
Lars Paulin
Petri Auvinen
E. Tapio Palva
Minna Pirhonen
Source :
Standards in Genomic Sciences, Vol 12, Iss 1, Pp 1-8 (2017)
Publication Year :
2017
Publisher :
BMC, 2017.

Abstract

Abstract Bacteria of the genus Pectobacterium are economically important plant pathogens that cause soft rot disease on a wide variety of plant species. Here, we report the genome sequence of Pectobacterium carotovorum strain SCC1, a Finnish soft rot model strain isolated from a diseased potato tuber in the early 1980’s. The genome of strain SCC1 consists of one circular chromosome of 4,974,798 bp and one circular plasmid of 5524 bp. In total 4451 genes were predicted, of which 4349 are protein coding and 102 are RNA genes.

Details

Language :
English
ISSN :
19443277
Volume :
12
Issue :
1
Database :
Directory of Open Access Journals
Journal :
Standards in Genomic Sciences
Publication Type :
Academic Journal
Accession number :
edsdoj.1c4e49f7e76b4a13b4878691fe0b679f
Document Type :
article
Full Text :
https://doi.org/10.1186/s40793-017-0301-z